PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 883225 | ||||||||
Common Name | ARALYDRAFT_682669 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 35785.6 Da PI: 6.9119 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.4 | 8.4e-51 | 19 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 lppGfrFhP+d+elv++yL k+ +++ + v+ +vd++k+ePwd+pk++ + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++l+ kg+lvg++ 883225 19 LPPGFRFHPKDDELVCDYLMKRSLHNNPRPPLVLIQVDLNKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAILR-KGKLVGMR 120 79******************999888866667899*************8777799**************************************9.999***** PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 ktLvfy+grap+g+ktdWvmhe+rl 883225 121 KTLVFYQGRAPRGRKTDWVMHEFRL 145 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-61 | 7 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.668 | 19 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-26 | 20 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
METEEEMKES SISMVEAKLP PGFRFHPKDD ELVCDYLMKR SLHNNPRPPL VLIQVDLNKC 60 EPWDIPKMAC VGGKDWYFYS QRDRKYATGL RTNRATATGY WKATGKDRAI LRKGKLVGMR 120 KTLVFYQGRA PRGRKTDWVM HEFRLQGSYH PPNQEDWVLC RVFHKNTEGV ICRDNMGSCF 180 DETASASLPP LMDPYINFDQ EPSSYLSDDH HFIINEHVPC FSNLSQNQTL NANLTTSVSE 240 LKIPCKNPNP LFTGGSAPAT LTGLDSFCSS DQMVLRALLS QLTKIDGSLG AKESQSYGEG 300 SSESLLTDIG IPSSAWNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-50 | 7 | 168 | 3 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 883225 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352835 | 0.0 | AK352835.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-A17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002894549.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 0.0 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | D7KN59 | 0.0 | D7KN59_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_4992 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 0.0 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | 883225 |
Entrez Gene | 9327933 |