PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 883118
Common NameARALYDRAFT_682562
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 457aa    MW: 51104.8 Da    PI: 8.3318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
883118genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-0592114123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              + C+ C+k F r  nL+ H r H
   883118  92 FICEVCNKGFQRDQNLQLHKRGH 114
              89******************988 PP
2zf-C2H214.20.00013169191123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              +kC++C+k +  +s+ k H +t+
   883118 169 WKCEKCSKKYAVQSDWKAHAKTC 191
              58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-691114No hitNo description
Gene3DG3DSA:3.30.160.604.4E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02692114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82492114IPR007087Zinc finger, C2H2
PfamPF121713.5E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM00355150134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-6164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MMMNRDMLFH HQQQQQQVEE NMSNLTSASG DQASVSSGNR TETSGSNINQ RQEQCFVPQS  60
SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG FQRDQNLQLH KRGHNLPWKL  120
KQRSNKDVIR KKVYVCPEPS CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV  180
QSDWKAHAKT CGTKEYRCDC GTLFSRRDSF ITHRAFCDAL AEESARVIPN PSMIQASNSP  240
HHLHHHQTQQ NISFSASSSQ NITSNSNLHG PMKQEESHHH FQNIPPWLVS SNPNPNVNNG  300
NLFPPLASSA NTGRSSFHQP SPAMSATALL QKAAQMGSTK STTPEEEERS SRSSYNNLIT  360
TTMAAMMTSP PEPGFGFQDY YMMNHQHHGG VEAFNGAFVP GEDKNDVVDD GGGETRDFLG  420
LRSLMSHNEI LSFANNLGNC LNTSASEQEQ QHSHQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36165227365Zinc finger protein JACKDAW
5b3h_F1e-36165227365Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118131KLKQRSNKDVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap883118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2271940.0AK227194.1 Arabidopsis thaliana mRNA for putative zinc finger protein, complete cds, clone: RAFL09-93-B07.
GenBankAY1504210.0AY150421.1 Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894488.10.0protein indeterminate-domain 7
RefseqXP_020869648.10.0protein indeterminate-domain 7
RefseqXP_020869649.10.0protein indeterminate-domain 7
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLD7KM560.0D7KM56_ARALL; Predicted protein
STRINGAl_scaffold_0001_48850.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]