PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

882294

Common Name

ARALYDRAFT_681738

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 423aa MW: 46384.7 Da PI: 9.4636

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
882294	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	181	203	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L+ H+ + H 882294 181 ACPQCGEVFPKLETLELHQAVrH 203 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	180	203	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.58	180	208	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.25E-23	205	418	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.7E-14	207	419	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MAPLPFIPEQ THSQTRLSSD TKKKNRNKKT SQPPPQTQTL KQKEKKKTVP TSSSSSSWSQ 60 IKNLLSCKQI EGPRVHEPSK ITSSSCGTSL CRFSDVVYGN ARVIHRSDHS PESSNLGQDA 120 RLLTRKPVTR GSSSSVRSNG CGAYTSYSTS KAMHFRNLSG CYECHMIVDP SRYPIAPRIC 180 ACPQCGEVFP KLETLELHQA VRHAVSELGP EDSGRNIVEI IFKSSWLRKD SPIYKIERIL 240 KVHNTQRTIQ RFEDCRDAVK SHAHGSTRKE PRSAADGNEL LCFHCTTVSC SLGSCGSTSI 300 CSAIPGCRVC TIIRHGFHAK TVRVGNGEGK EEIKGVRTTA SSGRAHDALR CFDQRRAMLV 360 CRVIAGRVRR VQSDVPEDES GSGSYDSVAG AAGVYTSLDD LVVYNPKAIL PCFVVIYKVS 420 EP*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MAPLPFIPEQ THSQTRLSSD TKKKNRNKKT SQPPPQTQTL KQKEKKKTVP TSSSSSSWSQ  60
IKNLLSCKQI EGPRVHEPSK ITSSSCGTSL CRFSDVVYGN ARVIHRSDHS PESSNLGQDA  120
RLLTRKPVTR GSSSSVRSNG CGAYTSYSTS KAMHFRNLSG CYECHMIVDP SRYPIAPRIC  180
ACPQCGEVFP KLETLELHQA VRHAVSELGP EDSGRNIVEI IFKSSWLRKD SPIYKIERIL  240
KVHNTQRTIQ RFEDCRDAVK SHAHGSTRKE PRSAADGNEL LCFHCTTVSC SLGSCGSTSI  300
CSAIPGCRVC TIIRHGFHAK TVRVGNGEGK EEIKGVRTTA SSGRAHDALR CFDQRRAMLV  360
CRVIAGRVRR VQSDVPEDES GSGSYDSVAG AAGVYTSLDD LVVYNPKAIL PCFVVIYKVS  420
EP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	882294

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228879	0.0	AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002894076.1	0.0	uncharacterized protein LOC9327454
TrEMBL	D7KBX8	0.0	D7KBX8_ARALL; Predicted protein
STRING	Al_scaffold_0001_4061	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-157	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	882294
Entrez Gene	9327454