PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

881438

Common Name

ARALYDRAFT_680882

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 300aa MW: 33872.7 Da PI: 7.8389

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
881438	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.4e-05	190	223	15	53
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++++++ +L++++ + +K + a++L++A+ YI+ 881438 190 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 223 7899999999999998.....8***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.508	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-9	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.71E-4	189	229	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.9E-7	190	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDRPTCHNDN GWVYDTNQVR YDQSSDQRLS KLTDLVGKHW SIAPPNNPDM NHNLHHHFDH 60 DHSQTNDDVS MYRQALEVKN EEDLCYNNGS SGGGSLFHDP TESSRNFLDV RLSRPLTDIN 120 PSFKPCFKAL NVSEFNKKEQ QTASLAAGRL GTTNAGKKKR CEEISDEVSK KAKCSAGSTL 180 SPEKELPKAK LRDKITTLQQ IVSPFGKTDT ASVLQEAITY INFYQEQVKL LSTPYMKNSS 240 IKDPWGGWDR EDHNKMGPKH LDLRSRGLCL VPISCTPIAY RDNSATDYWS PSYRGSLYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	881438

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493488	0.0	AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020866434.1	0.0	transcription factor bHLH111 isoform X2
Swissprot	Q9FYJ6	0.0	BH111_ARATH; Transcription factor bHLH111
TrEMBL	D7KGI3	0.0	D7KGI3_ARALL; Predicted protein
STRING	Al_scaffold_0001_3205	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8055	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	881438
Entrez Gene	9329734