PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 877653
Common NameARALYDRAFT_677097
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 291aa    MW: 32946.4 Da    PI: 5.877
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
877653genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.3e-102212591854
               HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               lF+   ++yp+++e+  LA+++gL+++qV++WF N R +
    877653 221 LFQHflHPYPNEAEKLVLASQTGLSKNQVSNWFINARVR 259
               5775569******************************98 PP
2BELL103.81.2e-3381152172
    BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
             e++e+++k++kLlsll++V++r+  y++ql++vissFe++ag gs+k+Yt lAl+a++rhF +L++ai++q+
  877653  81 ENHEIHIKITKLLSLLQQVEERFDLYCNQLEQVISSFEEIAGEGSSKVYTGLALQAMTRHFGSLEEAIISQL 152
             689******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-1411150IPR006563POX domain
PfamPF075264.3E-2917148IPR006563POX domain
SMARTSM003899.7E-10203267IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-27208269IPR009057Homeodomain-like
SuperFamilySSF466894.06E-18209272IPR009057Homeodomain-like
CDDcd000864.46E-11209264No hitNo description
PfamPF059201.9E-17220259IPR008422Homeobox KN domain
PROSITE profilePS5007111.791222263IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEEFRVRHEC SSLRGTLLDS RYAKAVQCLV EEVIDIGGRE VELCNNILIQ QLFPGRRRPG  60
FGLSSEIKSE FCSSGFMSLP ENHEIHIKIT KLLSLLQQVE ERFDLYCNQL EQVISSFEEI  120
AGEGSSKVYT GLALQAMTRH FGSLEEAIIS QLNSVRRSFI ISHQDVPKII SSGLSQLSLF  180
DGNNTSSSLQ RLGLVQGPQR HAWKPIRGLP ETSVAILRAW LFQHFLHPYP NEAEKLVLAS  240
QTGLSKNQVS NWFINARVRL WKPMIEEMYR DEFGDSSDES MQREANDDSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-18209270566Homeobox protein Meis2
3k2a_B9e-18209270566Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap877653
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464320.0DQ446432.1 Arabidopsis thaliana clone pENTR221-At1g75430 homeodomain-containing protein (At1g75430) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889025.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD10.0BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLD7KSP30.0D7KSP3_ARALL; Predicted protein
STRINGAl_scaffold_0002_22470.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.10.0BEL1-like homeodomain 11