PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 877212 | ||||||||
Common Name | ARALYDRAFT_676656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26543.2 Da PI: 8.1514 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.6e-11 | 63 | 117 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ hn+ Er RR r+ ++ +L +llP s+ ++kK s +i ++ YI +Lq 877212 63 KKQDHNAKERLRRMRLHASYLTLGTLLPDHSSSSKKKWSAPSIIDNVITYIPKLQ 117 6899*************************87889999***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.5E-12 | 57 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.43 | 62 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.73E-4 | 62 | 120 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-10 | 62 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-7 | 63 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-6 | 68 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MSSQPNHQTS ISSLLHDRLH IPPAETIVEK HSSAEKDDTC QSQRKRKEPV LHEVDGSSSG 60 ASKKQDHNAK ERLRRMRLHA SYLTLGTLLP DHSSSSKKKW SAPSIIDNVI TYIPKLQNEV 120 GELTLRKQKL VELERRGPSI RAISVLELGE SGYEAVVQIC LKKENEDEFS NLLHVMELQG 180 LSVLSASTSQ VCREQRVVCY NFHVKMDEKP CEGDDYITVL KNNIISSLRD NTKCK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 877212 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC016162 | 1e-161 | AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence. | |||
GenBank | AC016972 | 1e-161 | AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 1e-161 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002888825.1 | 1e-174 | transcription factor bHLH160 isoform X2 | ||||
Swissprot | F4I8F9 | 1e-158 | BH160_ARATH; Transcription factor bHLH160 | ||||
TrEMBL | D7KYS5 | 1e-172 | D7KYS5_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0002_1806 | 1e-173 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10558 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71200.1 | 1e-159 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 877212 |
Entrez Gene | 9324888 |
Publications ? help Back to Top | |||
---|---|---|---|
|