PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 876867
Common NameARALYDRAFT_676311
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 375aa    MW: 42625.9 Da    PI: 4.6609
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
876867genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.69.8e-34191112102
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl+k ye+++d++++++isws +  nsfv+ld++ f+ ++LpkyFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F kg+k+ll+++
        876867  19 FLRKCYEMVDDSSTDSIISWStSADNSFVILDTNVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADR---------WEFANDGFVKGQKDLLKNV 106
                   9********************7778*****************************************999.........******************9 PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                    r+k+
        876867 107 IRRKN 111
                   99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3412104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-3214109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5315109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.0E-2919109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-191942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVKSTDGGGG SSSSSVAPFL RKCYEMVDDS STDSIISWST SADNSFVILD TNVFSVQLLP  60
KYFKHSNFSS FIRQLNIYGF RKVDADRWEF ANDGFVKGQK DLLKNVIRRK NVQSSEQSKQ  120
ENRSTSTCAQ EKTEKSGLWK EVDILKGDKQ VLAQELIKVR QYQETTDTKM LHLEDRVQGM  180
EESQQEMLSF LVMVMKNPSL LVQLLQPKEK NSWRKAEGAT IVEEVTDEGE SNSYGLPLVK  240
YQPPSDNGTA KSNTNDVNDF LRNADMLKFC LDENHVPLII PDLYDDGAWE KLLLLSPSRK  300
KTKKQENIVK KGKDDSTLEE EEDGTMELDK SHMLKLISEE MEKPDDFEFG QLTPERSRNL  360
EILTEQMELL ASND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24710917129Heat shock factor protein 1
5d5v_B2e-24710917129Heat shock factor protein 1
5d5v_D2e-24710917129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap876867
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2518660.0AJ251866.1 Arabidopsis thaliana mRNA for heat shock factor 5 (hsf5 gene).
GenBankAY0943960.0AY094396.1 Arabidopsis thaliana At1g67970/T23K23_18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887161.10.0heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLD7KW840.0D7KW84_ARALL; Predicted protein
STRINGAl_scaffold_0002_14610.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.10.0heat shock transcription factor A8