PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 876088
Common NameARALYDRAFT_675532
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 373aa    MW: 42107 Da    PI: 9.6972
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
876088genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1248.6e-082412781754
             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
             A+rsR RK+++i eLe+ v++L+ae ++   el+ l++
  876088 241 AQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQ 278
             89*************************99999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0052230289IPR004827Basic-leucine zipper domain
CDDcd147037.28E-15233280No hitNo description
SuperFamilySSF579597.5E-6241283No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-5241281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MASSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYSEYIP SGLIGSRHGQ KLSDEKTHHQ  60
RTSSESHLVE ELPFWLDDLL NEPESPARKC GHRRSSSDSY AYLDVANATN ISLTLQNDFS  120
YRNTVSSTHR GIQELDRNKN AQDAAFYSDA NFLKQKSRQR DSLVASGARP SWLPFARESA  180
GGKNMGSLYM SQDATVITER KNYAEPLSHD PKMLSFEENN SNPPPVTYEA DNTKRAKQQF  240
AQRSRVRKLQ YISELERNVQ TLQAEGSKVS AELDFLNQRN LILSMENKAL KQRLETIAQE  300
KLIKQLEQEV LEKEIGRLRV LYQQQQQTQK PSASRGRATS KDLDSQFSSL SLNTKDSNCR  360
RDSVSVMGQF HF*
Cis-element ? help Back to Top
SourceLink
PlantRegMap876088
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0039800.0BT003980.1 Arabidopsis thaliana clone RAFL15-22-D03 (R20596) putative bZIP family transcription factor (At1g58110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888232.20.0uncharacterized protein At4g06598 isoform X1
RefseqXP_020891575.10.0uncharacterized protein At4g06598 isoform X2
RefseqXP_020891576.10.0uncharacterized protein At4g06598 isoform X3
SwissprotQ8W3M75e-62Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLD7KY870.0D7KY87_ARALL; Predicted protein
STRINGAl_scaffold_0002_6820.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.20.0bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]