PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

876002

Common Name

ARALYDRAFT_675446

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 282aa MW: 31781.1 Da PI: 8.3207

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
876002	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	23.7	6e-08	23	63	10	50
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ f +R KKA LSv C+ va i +++++ l+ ++ 876002 23 ETLFKQRFPCFKKKATKLSVHCGNSVAFICYGPDDDLHVWP 63 34444444455579**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.16E-10	20	98	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-6	20	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MAPREKKPNK SCSDDDDLQR KKETLFKQRF PCFKKKATKL SVHCGNSVAF ICYGPDDDLH 60 VWPQPQDHNP QTLPEIVAKF NALIDYKRKH HACDLYEFPN LKGVSGDELR NHLVNLDSHL 120 VGVKKQKISI LKRSILKKPK PKETEENDHL RVSDNSAIIS NRKVGLCLPW LPRKCSNLES 180 SATSKVSKDV VIPDSSRLDP FTLGFSGSEY FPADPMEITD NWGVCANSGV WDPSWLDFDC 240 SSTLFTDDWT VSGYTPLLRA TDSFTASIYK RRSKDSLGSV F*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	876002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007258	3e-86	AC007258.3 Arabidopsis thaliana chromosome I BAC F23H11 genomic sequence, complete sequence.
GenBank	AC009317	3e-86	AC009317.4 Genomic sequence for Arabidopsis thaliana BAC T30E16 from chromosome I, complete sequence.
GenBank	CP002684	3e-86	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020890336.1	0.0	uncharacterized protein LOC9324252
Swissprot	Q9ZUI9	1e-71	AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBL	D7KXS8	0.0	D7KXS8_ARALL; Predicted protein
STRING	Al_scaffold_0002_596	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11232	9	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60040.1	5e-67	AGAMOUS-like 49

Link Out ? help Back to Top
Phytozome	876002
Entrez Gene	9324252

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]