PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

875028

Common Name

ARALYDRAFT_674472

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 915aa MW: 101331 Da PI: 4.8892

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
875028	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	8e-29	612	662	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ 875028 612 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 662 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	601	682	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-25	615	662	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.37E-22	806	901	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.0E-23	814	896	No hit	No description
PROSITE profile	PS51745	24.191	816	899	IPR000270	PB1 domain
SMART	SM00666	2.3E-25	816	899	IPR000270	PB1 domain
CDD	cd06407	5.32E-40	817	898	No hit	No description
Pfam	PF00564	1.2E-15	817	898	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MEDDGGGDGG EGNGGFSPNS SFGAFSDTAM DLDFMDELLF DGCWLETTDS KSLNQTEQSA 60 SASTAMNDNS PFLCFGENPS QDNFSNEETE RMFPHSPSYQ AEKFLLEEAE VGKSWWIAPR 120 ASEGPSSSVK ERLLQAISGL NEAVQDKDFL VQIWVPIQQE GKSFLTTWAQ PHLFNQEYSS 180 LAEYRHVSET YNFPADEGMK EFVGLPGRVF LQKLPEWTPD VRFFRRDEYP RIKEAQKCDV 240 RGSLALPVFE RGSGICLGVV EIVTTTQKMN YRQELEKMCK ALEAVNLRSS SNLNPPSSEF 300 LQVYSDFYCA ALPEIKDFLA TVCRSYDLPL ALSWAPCARQ GKVGSRHSDE NFSQCVSTID 360 SACSVPDEQS KIFWEACSEH HLLQGEGIVG KAFKATKLFF VPEVTTFSKT NYPLAHHAKI 420 SGLHAALAVP LKSKSGLVEF VLEFFFPKAC LDTEAQQEIL KSLSVTLQQD FRSSNLVIDK 480 DLELEVVLPV RETMLFSENP LSGAETAESL TEIEMQESSW ISHMLMANEK GKDVSLSWEY 540 QKEDPKELSS GRENTQLDPV PNNVPLEAEQ FQQASTSGLK VDTGPSTESS SIGGGNMLGS 600 RKPGEKRRTK TEKTIGLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG IMRWPSRKIK 660 KVGHSLKKLQ LVMDSVQGAQ GSIQLDSFYT SFPELNSPNM SSNGPSLKNN EQSSHLNAQT 720 DNGIMAEDPR SPSSSCSKSS GSSNNNENTA NILVAEEADA VLKRAHCEAQ LHNVNQEETK 780 CLSRTQSHKT FKEPPVLENS SPLPGSSNKS LRAGGAIKVK ATFGEARIRF TLLPSCGFRE 840 LQQEIARRFN IDDISWFDLK YLDDDKEWVL LTCEADLVEC IDIYRLTQTH TIKISLNEAS 900 QVKLSGSFGS TGLS*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MEDDGGGDGG EGNGGFSPNS SFGAFSDTAM DLDFMDELLF DGCWLETTDS KSLNQTEQSA  60
SASTAMNDNS PFLCFGENPS QDNFSNEETE RMFPHSPSYQ AEKFLLEEAE VGKSWWIAPR  120
ASEGPSSSVK ERLLQAISGL NEAVQDKDFL VQIWVPIQQE GKSFLTTWAQ PHLFNQEYSS  180
LAEYRHVSET YNFPADEGMK EFVGLPGRVF LQKLPEWTPD VRFFRRDEYP RIKEAQKCDV  240
RGSLALPVFE RGSGICLGVV EIVTTTQKMN YRQELEKMCK ALEAVNLRSS SNLNPPSSEF  300
LQVYSDFYCA ALPEIKDFLA TVCRSYDLPL ALSWAPCARQ GKVGSRHSDE NFSQCVSTID  360
SACSVPDEQS KIFWEACSEH HLLQGEGIVG KAFKATKLFF VPEVTTFSKT NYPLAHHAKI  420
SGLHAALAVP LKSKSGLVEF VLEFFFPKAC LDTEAQQEIL KSLSVTLQQD FRSSNLVIDK  480
DLELEVVLPV RETMLFSENP LSGAETAESL TEIEMQESSW ISHMLMANEK GKDVSLSWEY  540
QKEDPKELSS GRENTQLDPV PNNVPLEAEQ FQQASTSGLK VDTGPSTESS SIGGGNMLGS  600
RKPGEKRRTK TEKTIGLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG IMRWPSRKIK  660
KVGHSLKKLQ LVMDSVQGAQ GSIQLDSFYT SFPELNSPNM SSNGPSLKNN EQSSHLNAQT  720
DNGIMAEDPR SPSSSCSKSS GSSNNNENTA NILVAEEADA VLKRAHCEAQ LHNVNQEETK  780
CLSRTQSHKT FKEPPVLENS SPLPGSSNKS LRAGGAIKVK ATFGEARIRF TLLPSCGFRE  840
LQQEIARRFN IDDISWFDLK YLDDDKEWVL LTCEADLVEC IDIYRLTQTH TIKISLNEAS  900
QVKLSGSFGS TGLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	875028

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY090943	0.0	AY090943.1 Arabidopsis thaliana At2g17150 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002886100.1	0.0	protein NLP1
Refseq	XP_020886766.1	0.0	protein NLP1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	D7L8S4	0.0	D7L8S4_ARALL; Predicted protein
STRING	Al_scaffold_0003_3669	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	875028
Entrez Gene	9320109

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]