PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 874157
Common NameARALYDRAFT_673601
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 361aa    MW: 39659.9 Da    PI: 5.278
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
874157genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.24.7e-09142188155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             s+y+GV++++++grW+++I  +       + ++g f+t   Aa+a+++a+ k++g
  874157 142 SQYRGVTFYRRTGRWESHIFNF------VN-PIGGFDT-AHAAAAYDRAAVKFRG 188
             78****************8664......33.9******.************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-5142188IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-8142196IPR016177DNA-binding domain
PROSITE profilePS5103210.863143196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-8143196IPR001471AP2/ERF domain
SMARTSM003803.8E-14143202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLDLNLDVDS AESTQNERDS ITVKGVSLNQ MDESVTSNSS AVNAEASSCI DGEDELCSTR  60
TVKFQFEILK GGEEDDDERS AVMTKEFFPV AKGMDFMDSS AQSSRSTVDI SFQRGKQGGD  120
FIGSGSGGDA SRVMQPPSQP SSQYRGVTFY RRTGRWESHI FNFVNPIGGF DTAHAAAAYD  180
RAAVKFRGLE ADINFIISDY EEDLKQMANL SKEEVVQVLR RQSSGFSRNN SRYQGVALQK  240
IGGWGAQMEQ FHGNACDKAA IQWNGREAAS SIEPHASWMI PEAGNLLLSS TSTWEVKDGP  300
KQKDRALRLL HVSNSTVCGR NTKMETHMAA AACDTPFNFL KRGSDHLTNR HALPSAFFSP  360
M
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap874157
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0019160.0BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874049.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X2
RefseqXP_020888751.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLD7L6B80.0D7L6B8_ARALL; Predicted protein (Fragment)
STRINGAl_scaffold_0003_27980.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2