PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 873923
Common NameARALYDRAFT_673367
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 375aa    MW: 40989.4 Da    PI: 5.8878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
873923genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10204251455
             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  873923 204 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 251
             8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-17198269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.48E-11198255No hitNo description
PROSITE profilePS5088815.542200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-17200269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNMDKETEQT LNYLPLGQSD PFGNGNDGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE  60
NFPISGGIRF PPYPGQFGSD REFGVLGSQP TTQESNKSSL LDPDSVSDRV HTTKSNSRKR  120
KSIPSGNGKE SPASSSLTAS NSKVSGENGG SKGGKRSKQD EAGSSKNGVE KCDSKGDNKD  180
DAKPPEAPKD YIHVRARRGQ ATDSHSLAER ARREKISERM TLLQDLVPGC NRITGKAVML  240
DEIINYVQSL QRQVEFLSMK LATVNPRMEF NANAALSTEM IQPGESLTQS LYAMACSEQR  300
LPSAYYSLGK NMPRFSDTQF PSNDGFVQAE TPGFWENNDL QSIVQMGFGD IQQQSNNNNC  360
KKSSEPTLQM KLEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap873923
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654410.0AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965360.0AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887229.10.0transcription factor bHLH77
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLD7L3G10.0D7L3G1_ARALL; Predicted protein
STRINGAl_scaffold_0003_25640.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]