PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

872116

Common Name

ARALYDRAFT_671560

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 457aa MW: 50330.4 Da PI: 7.0656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
872116	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	268	315	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq 872116 268 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 315 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-17	262	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.00E-10	262	319	No hit	No description
PROSITE profile	PS50888	15.663	264	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-17	264	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	268	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	270	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MENELFMNAG ASSHTPVMTS PSSSPAMLNW VSMETQPVDP SLGCNLFWEK STEQSIFHSA 60 LSSLVSSPTP SNSNFSGGEN VVIRELIGRL SNIGDIYGTP ASNGNVSGSC YATPMSSPTP 120 GRMMVTKTTM PITEFSGDPG FAERAARFSC FGSRSFNGRT NSPFPINNEQ PVATNEKMPR 180 ISSSPVLKPL VSHVPAGESS GEYSRKRKAK SKQNSPSTVS PSKEIEEKED SDPKRCKKSE 240 DNGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK 300 ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQHVLQL 360 DSSAETLLGD HHNNNLRLNP DISCNNIINP SETSETRSFI SHLPTLAHFT DSISQYSTFS 420 EDDLTSIIQM GFAQNRLHEL NHGSSKQVPS HMKAEL*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MENELFMNAG ASSHTPVMTS PSSSPAMLNW VSMETQPVDP SLGCNLFWEK STEQSIFHSA  60
LSSLVSSPTP SNSNFSGGEN VVIRELIGRL SNIGDIYGTP ASNGNVSGSC YATPMSSPTP  120
GRMMVTKTTM PITEFSGDPG FAERAARFSC FGSRSFNGRT NSPFPINNEQ PVATNEKMPR  180
ISSSPVLKPL VSHVPAGESS GEYSRKRKAK SKQNSPSTVS PSKEIEEKED SDPKRCKKSE  240
DNGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK  300
ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQHVLQL  360
DSSAETLLGD HHNNNLRLNP DISCNNIINP SETSETRSFI SHLPTLAHFT DSISQYSTFS  420
EDDLTSIIQM GFAQNRLHEL NHGSSKQVPS HMKAEL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	872116

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175369	0.0	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	0.0	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	BT026497	0.0	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884644.1	0.0	transcription factor bHLH62 isoform X1
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	D7L6J4	0.0	D7L6J4_ARALL; Predicted protein
STRING	Al_scaffold_0003_757	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	872116
Entrez Gene	9320710

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]