PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 871928 | ||||||||
Common Name | ARALYDRAFT_671372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26131.9 Da PI: 9.0836 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.2 | 5.6e-15 | 11 | 46 | 3 | 40 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i+n+s r+ tf kR++g++KK +ELS+LC++++ ii+ 871928 11 ISNDSSRKATFKKRKKGLMKKVNELSTLCGINA--IIY 46 9*****************************997..444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.12E-17 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.0E-19 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.105 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-15 | 11 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MTRKKVKVAY ISNDSSRKAT FKKRKKGLMK KVNELSTLCG INAIIYSPYD SNPGVWPSNS 60 GVQRFEILQN SGIEIGESSN NVGAFSGTSE RFGSMAVVAS TTAPTHTTIE AGSSSSFPAF 120 LNPIQQQHPQ FRHPSSPQVG FYEKSRSLNL NLNDNHNQNQ QKWFMEMMNH PDQLNYAAEQ 180 KGFPFMDDNH HNNNHHDPHQ QQQIPGDSST VSAAVSSSST ISLTNPNLTN NIWFC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKVAYISNDSSRKATFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 871928 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB830696 | 8e-37 | AB830696.1 Turritis glabra AGL80 gene for agamous-like MADS-box protein AGL80, partial cds, isolate: e064. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466902.1 | 1e-47 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 1e-26 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | D7L4P1 | 1e-175 | D7L4P1_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0003_569 | 1e-176 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G05860.2 | 6e-26 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 871928 |
Entrez Gene | 9318507 |
Publications ? help Back to Top | |||
---|---|---|---|
|