PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 871711
Common NameARALYDRAFT_671155
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 395aa    MW: 44565.1 Da    PI: 7.7202
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
871711genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.47.8e-344599155
  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
             kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl
   871711 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99
             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.22742102IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-3143100IPR009057Homeodomain-like
SuperFamilySSF466894.66E-1744100IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2345100IPR006447Myb domain, plants
PfamPF002494.6E-104798IPR001005SANT/Myb domain
PfamPF143791.3E-25147192IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MYYQNQHQGK NVLSSSRMHI TSERHPFLRG NSPGDSGLIL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS FNKIGMMTML  120
EEQTPDADES QSESLSIGPQ PNKNSPIGEA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQSVLEKAQ ETLGKQNLGA AGIEAAKVQL SELVSKVSAE YPNSSILEPK ELQNLCSQQM  240
QTTYLPDCSL ESCLTSSEGT QKNLKMLENN RLGLRTYLGD STSEQKEIME EQLFQRRELT  300
WTEGRRGNPY LSAMVSEAEQ RISYSERSPG RLSIGVGLHG HKSQHQQGNN EDHKLETRNR  360
KGMDSTTELD LNTHVENFCT KRTKQFDLNG FSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap871711
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2220890.0HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884424.10.0myb-related protein 2 isoform X1
SwissprotQ9SQQ90.0PHL9_ARATH; Myb-related protein 2
TrEMBLD7L2090.0D7L209_ARALL; Predicted protein
STRINGAl_scaffold_0003_3520.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]