PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

869802

Common Name

ARALYDRAFT_669246

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 293aa MW: 33694.1 Da PI: 4.865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
869802	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.6e-07	170	214	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq 869802 170 SIAARERRRRIAEKTHELGKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 214 567899***************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-10	162	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.697	164	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-9	167	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-5	170	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-9	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.83E-4	186	217	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MSMDCLSYFF NYDPPVQLRD CFIPEMDMII PETDSFLFQS LPQLEFHQPL FQEEAPSQTH 60 FDPFCDQFLS PQEIFLPNPK TEIFNETHDL DFLLPTPKRQ KLVNSSYHCN NTHNHFQSHN 120 PNFFDPFGDL DFVPEASTFP EFRVPDFSLA FKVGRGDQDD TKKPTLSSQS IAARERRRRI 180 AEKTHELGKL IPGGQKLNTA EMFQAAAKYV KFLQSQVGIL QLMQTTKKGS SNVQMETRFL 240 LESQAVQEKL STEEVCLVPC EMVQDLTTEE TIWKNPNISR EINKLLSKDL AN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	869802

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY234412	0.0	AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002879517.1	0.0	transcription factor bHLH53
Swissprot	Q84RD0	0.0	BH053_ARATH; Transcription factor bHLH53
TrEMBL	D7LH48	0.0	D7LH48_ARALL; Predicted protein
STRING	Al_scaffold_0004_1965	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	869802
Entrez Gene	9315584

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]