PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

869422

Common Name

ARALYDRAFT_668866

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 721aa MW: 79413.5 Da PI: 6.4459

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
869422	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00047	557	594	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Le++++++ Lq 869422 557 RQLIQDRIKELRELVPNgA------KCSIDSLLERTIKHMLFLQ 594 67799************77......5666667888888877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.1E-9	6	44	IPR025610	Transcription factor MYC/MYB N-terminal
Pfam	PF14215	2.9E-21	60	149	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	0.0025	538	595	No hit	No description
PROSITE profile	PS50888	11.02	544	593	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-4	557	612	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-5	557	612	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MGSTSQEILR SFCSNTDWNY AVFWQLKHRG SRMVLTLGDA YYDHHGTNIH GAHDRLGLAV 60 AKMSYHVYSL GEGIVGQVAV SGEHQWVFSE NHDNCHSAFE FHNVWESQIS AGIKTILVVA 120 VGRYGVVQLG SLCKVNEDVN LVNHIRHLFL ALRDPLADHA ANLMQCNMNN SLCLPNMPSE 180 GFHAEAFPDC SGEVDKAMDV EESNILTQYK TRRSHSMPYN TPSSCLVLEK TAQVVGGREV 240 VQGSTCGSYS GVTCGFPVDL VGAKHENQVG TNIISDAPHV GMTSGCKDPR GLDPNFHKYM 300 KNHVLNNTSS SSLAIEAERL ITGQSYPGLD STLQAMSRTD KESSYQNEVF QLSENHGNKH 360 IKETDRMLGR NCESSRFDAL MSSGYTFGGS ELLEALGSAF KQASTGQEEL LKSEHGSTMR 420 PTDDMSHSQL TFDSGPENLL DAVVANVCQS DGNSRDDMLS SRSVQSLLTS MELAEPSGQK 480 KHNIVYPIDS AMNQLPLAEV DIQQNSSDIC GAFSSIGFSS TYPSSSSDQF QTSLDMPKKN 540 KKRAKPGESS RPRPRDRQLI QDRIKELREL VPNGAKCSID SLLERTIKHM LFLQNVTKHA 600 DKLSKSANAK MQQKETGMQG SSCAVEVGGH LQVCSIIVEN LNKQGMVLIE MLCEECSHFL 660 EIANVIRSLD LIILRGITET QGEKTLICFV TESQNSKVMQ RMDILWSLVQ IFQPKANGKR 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MGSTSQEILR SFCSNTDWNY AVFWQLKHRG SRMVLTLGDA YYDHHGTNIH GAHDRLGLAV  60
AKMSYHVYSL GEGIVGQVAV SGEHQWVFSE NHDNCHSAFE FHNVWESQIS AGIKTILVVA  120
VGRYGVVQLG SLCKVNEDVN LVNHIRHLFL ALRDPLADHA ANLMQCNMNN SLCLPNMPSE  180
GFHAEAFPDC SGEVDKAMDV EESNILTQYK TRRSHSMPYN TPSSCLVLEK TAQVVGGREV  240
VQGSTCGSYS GVTCGFPVDL VGAKHENQVG TNIISDAPHV GMTSGCKDPR GLDPNFHKYM  300
KNHVLNNTSS SSLAIEAERL ITGQSYPGLD STLQAMSRTD KESSYQNEVF QLSENHGNKH  360
IKETDRMLGR NCESSRFDAL MSSGYTFGGS ELLEALGSAF KQASTGQEEL LKSEHGSTMR  420
PTDDMSHSQL TFDSGPENLL DAVVANVCQS DGNSRDDMLS SRSVQSLLTS MELAEPSGQK  480
KHNIVYPIDS AMNQLPLAEV DIQQNSSDIC GAFSSIGFSS TYPSSSSDQF QTSLDMPKKN  540
KKRAKPGESS RPRPRDRQLI QDRIKELREL VPNGAKCSID SLLERTIKHM LFLQNVTKHA  600
DKLSKSANAK MQQKETGMQG SSCAVEVGGH LQVCSIIVEN LNKQGMVLIE MLCEECSHFL  660
EIANVIRSLD LIILRGITET QGEKTLICFV TESQNSKVMQ RMDILWSLVQ IFQPKANGKR  720
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	869422

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY954808	0.0	AY954808.1 Arabidopsis thaliana hypothetical protein (At2g31280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002879316.1	0.0	transcription factor bHLH155 isoform X1
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	D7LD13	0.0	D7LD13_ARALL; Predicted protein
STRING	Al_scaffold_0004_1585	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	869422
Entrez Gene	9315383

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]