PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 869370 | ||||||||
Common Name | ARALYDRAFT_668814 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 123aa MW: 13904.9 Da PI: 9.9459 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 22 | 68 | 4 | 53 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + +++K +K++i A++ +++ 869370 22 SKACREKQRRDRLNDKFTELSSILEPG---RAPKTDKVAIISDAIRMVNQ 68 5778**********************9...9**************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.798 | 18 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-5 | 21 | 74 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-13 | 21 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-13 | 22 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-10 | 22 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-8 | 24 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
IDQLDGSASV RIKSESCAGS SSKACREKQR RDRLNDKFTE LSSILEPGRA PKTDKVAIIS 60 DAIRMVNQVR DEAQKLKDLN SSLQEKIKEL KDEKQKLKVE KERIEQQLKA IKTSFDSMAQ 120 LVS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 869370 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488632 | 1e-92 | AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AY085619 | 1e-92 | AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence. | |||
GenBank | BT002433 | 1e-92 | BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds. | |||
GenBank | BT006273 | 1e-92 | BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881143.2 | 2e-80 | transcription factor bHLH34 | ||||
Refseq | XP_020871298.1 | 8e-81 | transcription factor bHLH115, partial | ||||
Swissprot | Q9C682 | 4e-60 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | D7LCW5 | 4e-80 | D7LCW5_ARALL; Predicted protein (Fragment) | ||||
STRING | Al_scaffold_0004_1533 | 6e-81 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 2e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 869370 |
Entrez Gene | 9317210 |
Publications ? help Back to Top | |||
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