PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 868909
Common NameARALYDRAFT_668353
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 435aa    MW: 49251.4 Da    PI: 7.8667
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
868909genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-092482861955
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
               Fe   ++yp   ++  LAk++gLt++qV++WF N R ++
    868909 248 FEHflHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVRM 286
               5644599*****************************986 PP
2BELL1019.2e-33131199472
    BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
              lq+kkakL+s++e V++rY+qy++q+q +is Fe++aglgsa++Yt++A ++iS++Fr++k++i+ qi
  868909 131 SLQMKKAKLISMVETVEQRYEQYRDQIQNIISLFEQAAGLGSANSYTHMAFQTISKQFRAVKEMICLQI 199
             69****************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.0E-5571197IPR006563POX domain
PfamPF075261.6E-3082195IPR006563POX domain
PROSITE profilePS5007112.082226289IPR001356Homeobox domain
CDDcd000861.76E-11229289No hitNo description
SMARTSM003895.9E-9229293IPR001356Homeobox domain
SuperFamilySSF466891.67E-16230295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-26232293IPR009057Homeodomain-like
PfamPF059202.9E-17246285IPR008422Homeobox KN domain
PROSITE patternPS000270264287IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAAFFHGESE MREPFSDLFM MNLNPFLEPT TTTNAHNHHV YNLCFGFQQH RPRDEVDHIE  60
QGNSSISTFS NGGVFRALAP IYLRAAQELL NEIVNVGNGS HGAKQDRPMS KESTIYGVGD  120
INGGHKPGMA SLQMKKAKLI SMVETVEQRY EQYRDQIQNI ISLFEQAAGL GSANSYTHMA  180
FQTISKQFRA VKEMICLQIK QINKLLGQKE FEEQLKQLGK MAHHHSNAWR PQRGLPEKAV  240
SVLRAWLFEH FLHPYPRDLD KVMLAKQTGL TKSQVSNWFI NARVRMWKPL VEELYLEEMD  300
IEESRKGSNR NEHSTKGSSS KQPYNNTTSA ESSNSILPAF RQEFIENETP RQNSSSSYSV  360
VRFSKQHMNH ANFIHFNGGF ENYYTMVGNG VSLSLGMPHS CDQTLKNIHI GSTSQGSEIS  420
GIYPSSTYQI MDSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15235293563Homeobox protein Meis2
3k2a_B2e-15235293563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap868909
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565430.0DQ056543.1 Arabidopsis thaliana homeodomain-containing protein (At2g27220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880897.10.0BEL1-like homeodomain protein 5
RefseqXP_020884923.10.0BEL1-like homeodomain protein 5
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLD7LGU70.0D7LGU7_ARALL; Predicted protein
STRINGAl_scaffold_0004_10720.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5