PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

867401

Common Name

ARALYDRAFT_666845

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 882aa MW: 97036.8 Da PI: 4.7901

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
867401	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.8e-29	522	572	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ 867401 522 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 572 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.336	506	592	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-27	524	572	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-23	768	865	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.2E-24	776	859	No hit	No description
PROSITE profile	PS51745	22.036	779	862	IPR000270	PB1 domain
SMART	SM00666	2.4E-23	779	862	IPR000270	PB1 domain
Pfam	PF00564	7.4E-18	780	861	IPR000270	PB1 domain
CDD	cd06407	8.23E-34	780	861	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MENPSSSRDK GFCFPEIPVE EMDGWVKNLI SEEDMFSSSS TSELMNFESF ASWCNSPSAT 60 DILFSQYGLS TCTPFGGLEG SYAGEKRPTS SLSGAVDCSV PRSLNHSLDE KMLKALSLFM 120 EFSGEGILAQ FWTPIKTGDQ YMLSTCDQAY LLDSRLSGYR EVSRRFTFSA EANQGSYPDF 180 QAELQDCMLR YFSMMKHALD NEVRGSIAIP VLEASGSCCT VLELVTCREK PNFDVEMDSV 240 CRALQAVNLQ TSTIPRCQYL SSNQKEALAE IRDVLRAVCH AHRLPLALAW IPCSYSKGAN 300 GELVKIYGKN SKECSLLCIE ETACYVNDME MEGFVNACLE HYLREGQGIV GQALISNKPS 360 FSSDVKTFDI CEYPLVQHAR KFGLNAAVAT KLRSTFTGDS DYILEFFLPV SMKGSSEQQL 420 LLDSLSGTMQ RICRTLRTVS DAESAEGTEF GFLSGEMTNL PQATVSDGSF QTTFPDTNVN 480 STRSNFSNMS SDKRNEMAGS QGTLQQEISG ARRSEKKKSS TEKNVSLNVL QQYFSGSLKD 540 AAKSLGVCPT TLKRICRQHG IMRWPSRKIN KVNRSLRKIQ TVLDSVQGVE GGLKFDSVTG 600 EFVAVGPFIQ EFDTQKSLSS HDEDALARSQ GDMDEDASLE PLEGKSHDGG GVKLEEDVET 660 NQAGSGSLKE PWTWISKQSG LIYSDDIDIG KRSEEVKKDK DLCVRRCLSS VALAGDDMNT 720 GIERGNGMVE PNQSISSSMS DSSNSSGAVL LGSSSTSMEQ NWNQIRTHNN SGESGSSSTL 780 TVKATYREDT VRFKLDPYLV GCSQLYREVA KRFKLQESAF QLKYLDDEEE WVMLVSDSDL 840 HECFEILNSM RKHTVKFLVR DIPGAAMGSS AGSNGYLGTG T*

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MENPSSSRDK GFCFPEIPVE EMDGWVKNLI SEEDMFSSSS TSELMNFESF ASWCNSPSAT  60
DILFSQYGLS TCTPFGGLEG SYAGEKRPTS SLSGAVDCSV PRSLNHSLDE KMLKALSLFM  120
EFSGEGILAQ FWTPIKTGDQ YMLSTCDQAY LLDSRLSGYR EVSRRFTFSA EANQGSYPDF  180
QAELQDCMLR YFSMMKHALD NEVRGSIAIP VLEASGSCCT VLELVTCREK PNFDVEMDSV  240
CRALQAVNLQ TSTIPRCQYL SSNQKEALAE IRDVLRAVCH AHRLPLALAW IPCSYSKGAN  300
GELVKIYGKN SKECSLLCIE ETACYVNDME MEGFVNACLE HYLREGQGIV GQALISNKPS  360
FSSDVKTFDI CEYPLVQHAR KFGLNAAVAT KLRSTFTGDS DYILEFFLPV SMKGSSEQQL  420
LLDSLSGTMQ RICRTLRTVS DAESAEGTEF GFLSGEMTNL PQATVSDGSF QTTFPDTNVN  480
STRSNFSNMS SDKRNEMAGS QGTLQQEISG ARRSEKKKSS TEKNVSLNVL QQYFSGSLKD  540
AAKSLGVCPT TLKRICRQHG IMRWPSRKIN KVNRSLRKIQ TVLDSVQGVE GGLKFDSVTG  600
EFVAVGPFIQ EFDTQKSLSS HDEDALARSQ GDMDEDASLE PLEGKSHDGG GVKLEEDVET  660
NQAGSGSLKE PWTWISKQSG LIYSDDIDIG KRSEEVKKDK DLCVRRCLSS VALAGDDMNT  720
GIERGNGMVE PNQSISSSMS DSSNSSGAVL LGSSSTSMEQ NWNQIRTHNN SGESGSSSTL  780
TVKATYREDT VRFKLDPYLV GCSQLYREVA KRFKLQESAF QLKYLDDEEE WVMLVSDSDL  840
HECFEILNSM RKHTVKFLVR DIPGAAMGSS AGSNGYLGTG T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	511	517	RRSEKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	867401

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220674	0.0	AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBank	BT010459	0.0	BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882215.1	0.0	LOW QUALITY PROTEIN: protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	D7LWE8	0.0	D7LWE8_ARALL; Predicted protein
STRING	Al_scaffold_0005_2880	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	867401
Entrez Gene	9314347