PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 865791 | ||||||||
Common Name | ARALYDRAFT_665235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 205aa MW: 23462.6 Da PI: 9.9449 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.4 | 2e-18 | 124 | 158 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cgt kTplWR+gp+g tLCnaCG++yr +l 865791 124 CSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGRL 158 *******************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.7E-15 | 118 | 168 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.664 | 118 | 154 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.0E-15 | 120 | 180 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.7E-15 | 122 | 156 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.46E-18 | 123 | 172 | No hit | No description |
Pfam | PF00320 | 2.5E-16 | 124 | 158 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 124 | 149 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MLGREDVFVD VEEDFGTAMQ QLPIPVNELD KLPMDLDSVY GFADELREII EDSNLLIEDS 60 RKFDDLNHNK FIDVSKPSRN SSAQPTATRG RFHAPTRSRN KRGRKKRLNF TSPADLFGIT 120 NKSCSHCGTR KTPLWREGPR GAGTLCNACG MRYRTGRLLP EYRPASSPDF IPNVHSNFHR 180 KVMEIRRERK SPPPNYRFID RDKP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 101 | RSRNKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00391 | DAP | Transfer from AT3G45170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 865791 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL138649 | 3e-94 | AL138649.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3. | |||
GenBank | CP002686 | 3e-94 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002875717.1 | 1e-150 | GATA transcription factor 14 | ||||
Swissprot | Q9M1U2 | 1e-104 | GAT14_ARATH; GATA transcription factor 14 | ||||
TrEMBL | D7LNM1 | 1e-149 | D7LNM1_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0005_1270 | 1e-150 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16368 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45170.1 | 1e-106 | GATA transcription factor 14 |
Link Out ? help Back to Top | |
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Phytozome | 865791 |
Entrez Gene | 9313457 |