PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

865684

Common Name

ARALYDRAFT_665128

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 233aa MW: 25744.8 Da PI: 6.2878

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
865684	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.9	1.9e-40	5	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lp+GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t sgyWkatg+ +v+s ++++ 865684 5 LPVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPDNRV 107 79**************************999**********9656766667888*************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kkt+vfy+g+ap+g+kt+W m+ey++ 865684 108 IGVKKTMVFYTGKAPTGRKTQWKMNEYKA 136 *************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-42	3	141	IPR003441	NAC domain
PROSITE profile	PS51005	42.714	5	160	IPR003441	NAC domain
Pfam	PF02365	4.6E-20	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEEELPVGFR FYPTEVELLT YYLRIQLGGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR 60 GDAEQWLFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSPDNRVIGV KKTMVFYTGK 120 APTGRKTQWK MNEYKAVETA SVSTTATTIP KSGSSRAFDR RPTEAYAIER TLPSHGVETS 180 SRSTLSTSPE TSHSGGNQVD LPENATTITQ SISDMVDGLS QPFWEWEQMN WS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-32	5	138	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-32	5	138	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-32	5	138	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-32	5	138	17	144	NO APICAL MERISTEM PROTEIN
3swm_A	4e-32	5	138	20	147	NAC domain-containing protein 19
3swm_B	4e-32	5	138	20	147	NAC domain-containing protein 19
3swm_C	4e-32	5	138	20	147	NAC domain-containing protein 19
3swm_D	4e-32	5	138	20	147	NAC domain-containing protein 19
3swp_A	4e-32	5	138	20	147	NAC domain-containing protein 19
3swp_B	4e-32	5	138	20	147	NAC domain-containing protein 19
3swp_C	4e-32	5	138	20	147	NAC domain-containing protein 19
3swp_D	4e-32	5	138	20	147	NAC domain-containing protein 19
4dul_A	4e-32	5	138	17	144	NAC domain-containing protein 19
4dul_B	4e-32	5	138	17	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	865684

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138641	1e-125	AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBank	CP002686	1e-125	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001118771.1	1e-156	NAC domain containing protein 61
Swissprot	Q9M290	1e-160	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	D7LNR2	1e-170	D7LNR2_ARALL; Predicted protein
STRING	Al_scaffold_0005_1163	1e-171	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.1	1e-144	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	865684
Entrez Gene	9313402