PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 864749
Common NameARALYDRAFT_664193
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 377aa    MW: 42506.7 Da    PI: 6.8484
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
864749genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.8e-211053245
            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
            + en++ rq tf+kR+ngilKKA+ELS+LCd+++ +++fs+tgk
  864749 10 KLENTTGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGK 53
            679***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.642153IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-31160IPR002100Transcription factor, MADS-box
CDDcd002667.03E-25282No hitNo description
SuperFamilySSF554555.76E-26294IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRVKLKIKK LENTTGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT  60
RSSMEEVIAK FSQVSPQERT KRKFESLENL KKTFQKLDHD VNIREFIASS NSTIEDLSNQ  120
ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQHAMQI  180
ENANFVKDWS TCSMQDGIQI PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS  240
FGSYPGYYGT GKSPEITISG QETSFLDELN TGQLKPQTSS QQQFINNNIT AYNPNLQNDL  300
NHHQTLPPPI PPPQVYIPMA QREYHMNGFF EGPPPGLSAY NNNTNQTRFG GSSSNSLPCS  360
ISMFDEYLFS QMQQPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-13192190MEF2 CHIMERA
6byy_B9e-13192190MEF2 CHIMERA
6byy_C9e-13192190MEF2 CHIMERA
6byy_D9e-13192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap864749
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464590.0DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBankDQ6529540.0DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875185.10.0agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLD7LQC80.0D7LQC8_ARALL; Predicted protein
STRINGAl_scaffold_0005_2280.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.20.0AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]