PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 862141
Common NameARALYDRAFT_661585
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 588aa    MW: 64715.6 Da    PI: 6.4191
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
862141genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-15212271155
     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
             s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  862141 212 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 271
             57*******************999975578446*************************98 PP
2AP251.13.3e-16314365155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  862141 314 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 365
             57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-12212271IPR001471AP2/ERF domain
CDDcd000181.57E-21212281No hitNo description
SuperFamilySSF541712.75E-17212281IPR016177DNA-binding domain
SMARTSM003802.1E-29213285IPR001471AP2/ERF domain
PROSITE profilePS5103219.164213279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15213280IPR001471AP2/ERF domain
PRINTSPR003672.7E-6214225IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17314375IPR016177DNA-binding domain
CDDcd000182.68E-24314375No hitNo description
PfamPF008474.1E-11314365IPR001471AP2/ERF domain
SMARTSM003805.0E-33315379IPR001471AP2/ERF domain
PROSITE profilePS5103218.742315373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17315374IPR001471AP2/ERF domain
PRINTSPR003672.7E-6355375IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MNSMNNWLGF SLSPHDQNHH RTDVESSTTT TAVDVAGEYC FDLAAASDES SAVQTSFASP  60
FGVVLEAFTR DNNSHSRDWD INSGACSNIH NNEQNGPKLE NFLGRNTTIY NTNKNVGDGS  120
GSCEGPGGRD GGGGSLGLSM IKTWLSNHPV ANVNYQDNGN GARGLSLSMN SSTTCDSNNY  180
NNNNDVAQEN TIVDVVEATP KKTIESFGQR TSIYRGVTRH RWTGRYEAHL WDNSCKREGQ  240
TRKGRQVYLG GYDKEEKAAR AYDLAALKYW GTTTTTNFPM SEYEKEVEEM KHMTRQEYVA  300
SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFGTQE EAAEAYDIAA  360
IKFRGLSAVT NFDMSRYNVK AILESPSLPI GSSAKRLKDV NNPVPSMMIS NNVSESGNNA  420
SGWQNAAFQH NQGVDLNLLQ QQQERYVGYY NGRNLSTESS RVCFKQEEEQ QHFLSNSPSL  480
MTNVDHHIST SDDSVTVCGN VVSYGGYQGF AIPVGTSVNC DVFTAAEIAY NARNRYYYAQ  540
QQQQQQIQHS PGGDFPVAIS NNVSSNMYFH GEGGGEGAST FTVWNDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126133GGRDGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap862141
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856840.0AY585684.1 Arabidopsis thaliana clone at5g17430 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873828.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ6PQQ40.0BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLD7LX050.0D7LX05_ARALL; Predicted protein
STRINGAl_scaffold_0006_16500.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]