PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 861370
Common NameARALYDRAFT_660814
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 302aa    MW: 34569.6 Da    PI: 10.3146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
861370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-1919113199
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             f+k l++ d+++++   +p +f+++++ + e s  ++++ ++g+sW+vk+  +k+++  ++ ++GW+ Fv++n L + +f++F+++g+++f  +v +f+k
  861370  19 FVKLLKHFDMSSENTRAIPYDFVRNFSDN-ELSGNMKIRVQWGNSWKVKI--SKNPRFyFMEKSGWETFVRDNALGDYEFLTFTHKGKMSF--TVNIFNK 113
             8999999****************887655.5777****************..******555569*********************999999..9999976 PP
2B341.13.2e-132212901486
             T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
      B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
             + l +p +fa++++ k  e++++++ +++g +sW+v +    k++++++++GWk  +++  +  gD++ F+l++
  861370 221 KSLAIPTTFANDYMPK--EKTMVKIHHPDGkKSWNVAF--VVKKKGHIFSGGWKCLCREYPVVFGDTCKFTLIK 290
             3489******999744..5679*******999******..888888*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2015120IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-1918112No hitNo description
SMARTSM010193.6E-2219114IPR003340B3 DNA binding domain
PROSITE profilePS5086313.60619114IPR003340B3 DNA binding domain
PfamPF023621.9E-1819113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-18205300IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.926208301IPR003340B3 DNA binding domain
SMARTSM010192.8E-14211301IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-15213298IPR015300DNA-binding pseudobarrel domain
CDDcd100179.21E-9218290No hitNo description
PfamPF023623.6E-10220291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASNPDFLWC KEERKQESFV KLLKHFDMSS ENTRAIPYDF VRNFSDNELS GNMKIRVQWG  60
NSWKVKISKN PRFYFMEKSG WETFVRDNAL GDYEFLTFTH KGKMSFTVNI FNKDGKEMMQ  120
PPQSRAFLAS SSRIKTEQDV KREEVLVSSD SSSRGPTTAA VSNGNGEGMY KRKLNFGKKK  180
AEETQNSKRT ERVVSRQRVY AGAPSSSVAE FNIFISKSYI KSLAIPTTFA NDYMPKEKTM  240
VKIHHPDGKK SWNVAFVVKK KGHIFSGGWK CLCREYPVVF GDTCKFTLIK PYELLLAVSR  300
P*
Cis-element ? help Back to Top
SourceLink
PlantRegMap861370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566750.0DQ056675.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g09780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873422.10.0B3 domain-containing protein REM23
SwissprotQ9LXE11e-174REM23_ARATH; B3 domain-containing protein REM23
TrEMBLD7M2720.0D7M272_ARALL; Predicted protein
STRINGAl_scaffold_0006_8790.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.11e-177B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]