PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 861018 | ||||||||
Common Name | ARALYDRAFT_660462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20680.2 Da PI: 6.4053 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120 | 1.3e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrrkC++dCv++pyf eq +++fa+vhk+FGasnv+k l +lp ++r+ a+ ++ yeA r+rdPvyG+v++i++l+qq+ +l++e++ l+++ 861018 7 SCGACKFLRRKCNRDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLHLPLHQRSVAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQ 107 6***********************9978*******************************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.432 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-35 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MAGHGSSCGA CKFLRRKCNR DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPLHQ 60 RSVAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE IEFLGSQMTN FSYSTQNGSQ 120 LNNIPEFVNQ MTVDTTNFVD ESVLNNVDGR NCLDGFFTNS EEMLVNHQWL QNMDYYYYAP 180 QN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 3 | 132 | 7 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 3 | 132 | 7 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 861018 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473857 | 0.0 | AB473857.1 Arabidopsis thaliana ASL24 mRNA for ASYMMETRIC LEAVES2-like 24 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873236.1 | 1e-136 | LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 1e-126 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | D7LZ36 | 1e-135 | D7LZ36_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0006_527 | 1e-136 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-128 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | 861018 |
Entrez Gene | 9309304 |
Publications ? help Back to Top | |||
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