PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 860820 | ||||||||
Common Name | ARALYDRAFT_660264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 28013.8 Da PI: 9.8236 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.7 | 1e-13 | 69 | 118 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52 ++ +hn+ Er RR+++N ++ Lr+llP + +++Kls +++ ++v+YI 860820 69 KKLNHNASERDRRRKLNALYSSLRDLLPLsD---QKRKLSIPMTVARVVKYIP 118 6789*************************66...9999**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-13 | 68 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.70E-11 | 68 | 125 | No hit | No description |
PROSITE profile | PS50888 | 14.342 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-11 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-10 | 69 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.9E-9 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEYPWLQSQA DSFSPTLQYL PSFLYPLDDS KSYNINLYPH HIRLTRHSND TNSNCNNDQE 60 EVRGTVLEKK LNHNASERDR RRKLNALYSS LRDLLPLSDQ KRKLSIPMTV ARVVKYIPEQ 120 KQELQRLSRR KEELLKRISR KTHQEQLRNK AMMDSIDSSS SQRIAANWLT DTEIAVQIAT 180 SKWTSVSDML LRLEENGLNV ISVSSSVSST ARIFYTLHLQ MRGDCKVRLE ELINGTLLGL 240 GH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 860820 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ519810 | 0.0 | AJ519810.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor. | |||
GenBank | DQ446915 | 0.0 | DQ446915.1 Arabidopsis thaliana clone pENTR221-At5g04150 basic helix-loop-helix family protein (At5g04150) mRNA, complete cds. | |||
GenBank | DQ653262 | 0.0 | DQ653262.1 Arabidopsis thaliana clone 0000017164_0000012012 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873137.2 | 1e-178 | transcription factor bHLH101 | ||||
Swissprot | Q9FYE6 | 1e-128 | BH101_ARATH; Transcription factor bHLH101 | ||||
TrEMBL | D7LXG0 | 1e-177 | D7LXG0_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0006_329 | 1e-178 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04150.1 | 1e-116 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 860820 |
Entrez Gene | 9307148 |