PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 860781 | ||||||||
Common Name | ARALYDRAFT_660225 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 24916.1 Da PI: 8.4018 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.5e-19 | 80 | 132 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eql Le F+++ +++ e++ +LAk+lgL+ rqV vWFqNrRa++k 860781 80 NKRLTSEQLASLELRFQEDFKLDSERKLKLAKELGLEPRQVAVWFQNRRARWK 132 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112 | 3.9e-36 | 78 | 166 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k +rl++eq+++LE F+e+ kL++erK +la+eLgl+prqvavWFqnrRAR+k k+lE+ y++L+++yda+ +e+++L++ev++Lr+ 860781 78 KKNKRLTSEQLASLELRFQEDFKLDSERKLKLAKELGLEPRQVAVWFQNRRARWKVKHLEESYDSLRQEYDAIWREKQMLHDEVKKLRA 166 589************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-19 | 66 | 133 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-20 | 72 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-17 | 77 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-15 | 78 | 135 | No hit | No description |
Pfam | PF00046 | 1.2E-16 | 79 | 132 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 7.6E-6 | 105 | 114 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.6E-6 | 114 | 130 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-6 | 136 | 166 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEWSTTSNVQ NERVAFMPPP WLESNSFNSL RSFNYDSYTA GNSYKSANTQ TGPVIPVPES 60 EKIINAYQCP SNNNEMIKKN KRLTSEQLAS LELRFQEDFK LDSERKLKLA KELGLEPRQV 120 AVWFQNRRAR WKVKHLEESY DSLRQEYDAI WREKQMLHDE VKKLRAIILR DQGLMMNINQ 180 TAGGDQTIGL GDQYNSLMMV ASSGWPPISQ PPNPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 860781 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878992.1 | 1e-137 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-100 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | D7LWT8 | 1e-159 | D7LWT8_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0006_290 | 1e-159 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-102 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | 860781 |
Entrez Gene | 9307129 |
Publications ? help Back to Top | |||
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