PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 860234 | ||||||||
Common Name | ARALYDRAFT_659678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 37157.5 Da PI: 8.6666 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.5 | 4.5e-52 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103 pGfrFhPtdeelv++yLk+kv +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t g+Wkatg+d++++s +++ +glk 860234 17 LPGFRFHPTDEELVSFYLKRKVLHKSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLdSTRCIGLK 118 69**************************9.89***************8778899**************************************9856677**** PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k+Lvfy+gra kg+ktdW+mhe+rl 860234 119 KSLVFYRGRAAKGVKTDWMMHEFRL 143 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-58 | 15 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.056 | 16 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-25 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDDEESNIVE RYDDVVLPGF RFHPTDEELV SFYLKRKVLH KSLPFELIKK VDIYKYDPWD 60 LPKLAAMGEK EWYFYCPRDR KYRNSTRPNR VTGGGFWKAT GTDRPIYSLD STRCIGLKKS 120 LVFYRGRAAK GVKTDWMMHE FRLPSLSDSH HSTYPNYNNK KQHLNNNNNS KELPSNDAWA 180 ICRIFKKTNA VSSQRSIPQS WVYPTIPDTN QYNSHSHNNT ATLLASSDGL SHISTRQNLI 240 PSPVNEPTSF TESAAAYFAS QMLGVPYNTT RNSGTGDALF LSNNENNYFN NLTGALTHEL 300 PNVRAMVMEE TMVSEMSATS YSTNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-53 | 18 | 189 | 17 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00537 | DAP | Transfer from AT5G39820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 860234 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016876 | 1e-144 | AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21. | |||
GenBank | CP002688 | 1e-144 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002868697.1 | 0.0 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9FIW5 | 0.0 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | D7MJH8 | 0.0 | D7MJH8_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0007_3733 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 0.0 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
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Phytozome | 860234 |
Entrez Gene | 9304769 |