PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 860234
Common NameARALYDRAFT_659678
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 326aa    MW: 37157.5 Da    PI: 8.6666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
860234genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.5e-52171432128
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
              pGfrFhPtdeelv++yLk+kv +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s  +++ +glk
  860234  17 LPGFRFHPTDEELVSFYLKRKVLHKSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLdSTRCIGLK 118
             69**************************9.89***************8778899**************************************9856677**** PP

     NAM 104 ktLvfykgrapkgektdWvmheyrl 128
             k+Lvfy+gra kg+ktdW+mhe+rl
  860234 119 KSLVFYRGRAAKGVKTDWMMHEFRL 143
             ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-5815187IPR003441NAC domain
PROSITE profilePS5100556.05616187IPR003441NAC domain
PfamPF023651.7E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDDEESNIVE RYDDVVLPGF RFHPTDEELV SFYLKRKVLH KSLPFELIKK VDIYKYDPWD  60
LPKLAAMGEK EWYFYCPRDR KYRNSTRPNR VTGGGFWKAT GTDRPIYSLD STRCIGLKKS  120
LVFYRGRAAK GVKTDWMMHE FRLPSLSDSH HSTYPNYNNK KQHLNNNNNS KELPSNDAWA  180
ICRIFKKTNA VSSQRSIPQS WVYPTIPDTN QYNSHSHNNT ATLLASSDGL SHISTRQNLI  240
PSPVNEPTSF TESAAAYFAS QMLGVPYNTT RNSGTGDALF LSNNENNYFN NLTGALTHEL  300
PNVRAMVMEE TMVSEMSATS YSTNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-531818917170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap860234
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-144AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-144CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868697.10.0putative NAC domain-containing protein 94
SwissprotQ9FIW50.0NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLD7MJH80.0D7MJH8_ARALL; Predicted protein
STRINGAl_scaffold_0007_37330.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.10.0NAC domain containing protein 94