PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 858789 | ||||||||
Common Name | ARALYDRAFT_658233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 296aa MW: 34979.8 Da PI: 7.9215 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 66.5 | 6e-21 | 17 | 103 | 2 | 96 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F++ +y++++d + +++isws++g+sf+++++eef ++ L++ F+ +n++SF Ln gF+k+++ + weF++++F +g+ +l+++ 858789 17 FITTTYDMVDDLSSDSIISWSQSGKSFIIWNPEEFYNNFLQRfCFQGDNINSFFSYLNSHGFRKIDSGN---------WEFANDNFVRGQPHLINN 103 9***************************************9977*********************9988.........*************99876 PP | |||||||
2 | HSF_DNA-bind | 59.5 | 8.8e-19 | 152 | 243 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F +klye+++d++ + +isws++g+sf++++++ef k++L ++ + ++ F +L+ + Fkk++ ++ weF++++F +g+ +l+e i 858789 152 FPTKLYEMVDDPSSDAIISWSQSGRSFIIWNPKEFCKDLLRRFSNTLHIPLFFHKLQRFSFKKIDPKK---------WEFANDNFVRGQCHLVEIII 239 899*************************************************************9998.........**************999887 PP XXXX CS HSF_DNA-bind 99 rkks 102 +++ 858789 240 SNEK 243 6655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.4E-25 | 8 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.03E-23 | 13 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.8E-37 | 13 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-7 | 17 | 40 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-19 | 17 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-7 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.4E-25 | 143 | 235 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.1E-27 | 148 | 241 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.25E-23 | 149 | 238 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.0E-18 | 152 | 237 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MLNLNENEGS STSISNFITT TYDMVDDLSS DSIISWSQSG KSFIIWNPEE FYNNFLQRFC 60 FQGDNINSFF SYLNSHGFRK IDSGNWEFAN DNFVRGQPHL INNTISCVIE GRVLYDQSMD 120 MFKVRKLFER QVKEVEDQLP PHNSYPTSKR PFPTKLYEMV DDPSSDAIIS WSQSGRSFII 180 WNPKEFCKDL LRRFSNTLHI PLFFHKLQRF SFKKIDPKKW EFANDNFVRG QCHLVEIIIS 240 NEKEKIDQLL KRYDRQKKLG EARELFKLQI EEMKKTKEVK EQEVRLQHHI GLCKL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 858789 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493684 | 0.0 | AB493684.1 Arabidopsis thaliana At4g18870 mRNA for hypothetical protein, partial cds, clone: RAAt4g18870. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870020.1 | 0.0 | heat stress transcription factor C-1 | ||||
TrEMBL | D7M9E4 | 0.0 | D7M9E4_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0007_2288 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20171 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18870.1 | 1e-131 | HSF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 858789 |
Entrez Gene | 9306091 |