PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 857922
Common NameARALYDRAFT_657366
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 264aa    MW: 29722.2 Da    PI: 10.7647
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
857922genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.72.2e-173897261
            XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
            ++ +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le+ N++L ke+ee +ke  k  +
  857922 38 AAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEGNEKLLKEIEESTKERFKKLM 97
            5789************************************************99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.0E-143592No hitNo description
SMARTSM003383.3E-1337101IPR004827Basic-leucine zipper domain
PfamPF001702.0E-163898IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.6343991IPR004827Basic-leucine zipper domain
CDDcd147072.19E-144187No hitNo description
SuperFamilySSF579594.56E-104192No hitNo description
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
SuperFamilySSF476997.44E-15150254IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
CDDcd002611.65E-10150254No hitNo description
PRINTSPR004961.5E-28151172IPR000617Napin/ Bra allergen
PRINTSPR004961.5E-28194211IPR000617Napin/ Bra allergen
Gene3DG3DSA:1.10.110.102.9E-15202255No hitNo description
PRINTSPR004961.5E-28211224IPR000617Napin/ Bra allergen
PRINTSPR004961.5E-28230244IPR000617Napin/ Bra allergen
PRINTSPR004961.5E-28244256IPR000617Napin/ Bra allergen
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0045735Molecular Functionnutrient reservoir activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSQPQQHSSF QMIEGSMVGG GGMRGKRGRV MTKAMDKAAA QRQKRMIKNR ESAARSRERK  60
QAYQVELETL AAKLEEGNEK LLKEIEESTK ERFKKLMDVL IPFSKLSSKK WRTNSSSSAH  120
LSLSASSSPT LPSTALSSNY DASNPIGPRQ KCQREFQKEQ HLRACQRLMR KQMRQGHGGG  180
RRHREPAETL ATPEVLQRAS PEDPDCVCPT LKQAAKAVRL QGQQHQPMKV RKIYQTAKNL  240
PNICKIPQVD VCPFQIPSFP SYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sm7_A3e-261502543106recombinant Ib pronapin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap857922
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0030271e-110AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence.
GenBankAY0876031e-110AY087603.1 Arabidopsis thaliana clone 36980 mRNA, complete sequence.
GenBankBT0244951e-110BT024495.1 Arabidopsis thaliana At1g03970 mRNA, complete cds.
GenBankCP0026841e-110CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU018231e-110U01823.1 Arabidopsis thaliana Columbia bZIP protein GBF4 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7MEI40.0D7MEI4_ARALL; Predicted protein
STRINGAl_scaffold_0007_14210.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.15e-29G-box binding factor 4