PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

857917

Common Name

ARALYDRAFT_657361

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 431aa MW: 47309 Da PI: 10.063

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
857917	genome	JGI	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	197	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.64E-24	220	429	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.4E-10	221	428	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MEASSTRSEK KKKKTIQREN TDIQKIKKLP SVWFSLKKSL PCKSDVSDVH IPRSRKELTP 60 ISTKRTTTTS GGGVGGRSGC SRSIANLKDV IHGNQRHLEK PLCSSPRSIG SSEFLNPITH 120 DVIFSNSTCE LKITAAGATE FVGTLTPGTP VNYSSSRRSQ ASRKASSLDK EGLGFHQSRR 180 ERDRDSAING DNSSVSCHKC GEKFSKLEAA EAHHLTKHAV TELMEGDSSR KIVEIICRTS 240 WLKTENQGGR IDRILKVHNM QKTLARFEEY RDTVKIRASK LQKKHPRCIA DGNELLRFHG 300 TTVACALGIN GSTSLCSSEK CCVCRIIRNG FSAKREMNNG IGVFTASTSE RAFESIVIDD 360 GGGSDRKALI VCRVIAGRVH RPVENLEEMG GLLNGFDSLA GKVGLYTNVE ELYLLNSRAL 420 LPCFVLICKR *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MEASSTRSEK KKKKTIQREN TDIQKIKKLP SVWFSLKKSL PCKSDVSDVH IPRSRKELTP  60
ISTKRTTTTS GGGVGGRSGC SRSIANLKDV IHGNQRHLEK PLCSSPRSIG SSEFLNPITH  120
DVIFSNSTCE LKITAAGATE FVGTLTPGTP VNYSSSRRSQ ASRKASSLDK EGLGFHQSRR  180
ERDRDSAING DNSSVSCHKC GEKFSKLEAA EAHHLTKHAV TELMEGDSSR KIVEIICRTS  240
WLKTENQGGR IDRILKVHNM QKTLARFEEY RDTVKIRASK LQKKHPRCIA DGNELLRFHG  300
TTVACALGIN GSTSLCSSEK CCVCRIIRNG FSAKREMNNG IGVFTASTSE RAFESIVIDD  360
GGGSDRKALI VCRVIAGRVH RPVENLEEMG GLLNGFDSLA GKVGLYTNVE ELYLLNSRAL  420
LPCFVLICKR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	857917

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493703	0.0	AB493703.1 Arabidopsis thaliana At4g27240 mRNA for hypothetical protein, partial cds, clone: RAAt4g27240.
GenBank	BT030059	0.0	BT030059.1 Arabidopsis thaliana At4g27240 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869573.1	0.0	uncharacterized protein LOC9303590
TrEMBL	D7MEI0	0.0	D7MEI0_ARALL; Predicted protein
STRING	Al_scaffold_0007_1416	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3553	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Phytozome	857917
Entrez Gene	9303590