PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 857250
Common NameARALYDRAFT_656694
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 340aa    MW: 38881.2 Da    PI: 6.7833
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
857250genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-16351141498
             T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
              rl +p kf ++++ k   ++ +tl+++sg +++v++  +  +++   ++ GW +Fvk++ L+e+D +vFk++g sef   v vf+
  857250  35 YRLAIPQKFSTHCKRK--LPQIVTLKSPSGATYSVRV--EEDDEKtLAFGFGWDKFVKDHSLEENDLLVFKFHGLSEF--EVLVFD 114
             589*******888766..7889***************..777766699***********************9887999..777776 PP
2B361.91e-19224312190
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sef 90 
             f+  + +s+vl+++ l++p k + ++++  ++  +++ ++ + r+W++k+++ + +g+  +++GWk+Fv++n+L+egD++vF+  ++  +  
  857250 224 FLVFMRRSHVLSKCFLTIPYKWCVKNMLMARQ--EVV-MQVDQRKWDMKFNFFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSvtKPL 312
             6677899*******************888666..455.56799*******996666666699*********************654313333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2020114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.23922116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-2022114IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-1724114No hitNo description
SMARTSM010194.8E-1925116IPR003340B3 DNA binding domain
PfamPF023621.3E-1335114IPR003340B3 DNA binding domain
CDDcd100171.14E-20224320No hitNo description
PfamPF023628.2E-18224317IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-19224320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19224320IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.3E-20224322IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296224322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEESCEDCMK WEEELYWTHF QTLHFTQLLL PGFHYRLAIP QKFSTHCKRK LPQIVTLKSP  60
SGATYSVRVE EDDEKTLAFG FGWDKFVKDH SLEENDLLVF KFHGLSEFEV LVFDGQTLCE  120
KPTSYFVRKC GHAEKTKVSQ TGYEQEEHIN PDIDTASAQL PVISPTSTVR VSERKYHPLS  180
SFKKMRGEIS NDNLDQKTDV EMISAGSNNR ALSLAKGAIS PDGFLVFMRR SHVLSKCFLT  240
IPYKWCVKNM LMARQEVVMQ VDQRKWDMKF NFFGARGSGG ISTGWKKFVQ DNNLREGDVC  300
VFEPANSVTK PLHLNVYIFC GEETERSKNV DSVHTISSE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap857250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4411170.0AJ441117.1 Arabidopsis thaliana mRNA for auxin response factor 36 (arf36 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867189.20.0B3 domain-containing protein REM16 isoform X3
SwissprotQ8RYD10.0REM16_ARATH; B3 domain-containing protein REM16
TrEMBLD7M8S60.0D7M8S6_ARALL; Predicted protein
STRINGAl_scaffold_0007_7490.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]