PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 856241
Common NameARALYDRAFT_655622
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BES1
Protein Properties Length: 290aa    MW: 31185.9 Da    PI: 4.8669
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
856241genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822101.22e-31642011143
  DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagssas..aspesslq. 95 
             ggs+r+++ +E+E++k+RER+RRai+a+i+              aD+n+V++AL+reAGwvv +DGtt++   +g+kp+  ++a aagssas  as+++s+  
  856241  64 GGSRRSRPLEEKERTKLRERHRRAITARILG-------------ADINDVIAALAREAGWVVLPDGTTFPaksQGTKPTggSSAVAAGSSAShiASQQTSTPa 153
             689**************************95.............8************************9888999**9988888888888877889999888 PP

  DUF822  96 sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvl 143
             ++++ss  +spve +++++k + +p++s +d  +++s++ + +v + +
  856241 154 LRVVSSGRRSPVELSACRMKGVFTPASSPYDIFPTQSPELVGSVNKAE 201
             ***********************************9985555544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.4E-2265187IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.47E-6228276IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.807.0E-10231276IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MATDMQKLLG TSEEDDDEEM DMDVKEEDDG DRRNRDTRAA SGSSNDEFMF QQSMQDQVGT  60
PGGGGSRRSR PLEEKERTKL RERHRRAITA RILGADINDV IAALAREAGW VVLPDGTTFP  120
AKSQGTKPTG GSSAVAAGSS ASHIASQQTS TPALRVVSSG RRSPVELSAC RMKGVFTPAS  180
SPYDIFPTQS PELVGSVNKA EGLVGCSVDV INSKQILDIP PNLTEQDFSG TPYVPVYVML  240
PLGVINMKCE LADRDGLVKH LRILKSIHVD GVKVDILHDT NPGPPESADL
Cis-element ? help Back to Top
SourceLink
PlantRegMap856241
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882038.11e-171beta-amylase 7
RefseqXP_020883208.11e-171beta-amylase 7
SwissprotO808311e-161BAM7_ARATH; Beta-amylase 7
TrEMBLD7MXE20.0D7MXE2_ARALL; Predicted protein (Fragment)
STRINGAl_scaffold_0371_30.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.11e-127beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]