PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 855832 | ||||||||
Common Name | ARALYDRAFT_655194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 254aa MW: 27026 Da PI: 8.7982 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32 | 2e-10 | 1 | 20 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 f+++tGtCk+G++CkF+H++ 855832 1 FYLKTGTCKFGASCKFHHPK 20 8*****************96 PP | |||||||
2 | zf-CCCH | 36.2 | 1e-11 | 44 | 66 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tG+Ck+G +CkF+H++ 855832 44 ECSYYLKTGQCKFGITCKFHHPQ 66 7********************97 PP | |||||||
3 | zf-CCCH | 38.9 | 1.5e-12 | 203 | 229 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G +CkF+H++ 855832 203 PGEPECQYYLKTGDCKFGTSCKFHHPR 229 5799*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.2 | 1 | 20 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-8 | 1 | 20 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 1 | 21 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-4 | 2 | 19 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.6E-5 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 43 | 67 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 44 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 45 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 202 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 202 | 230 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 204 | 229 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 207 | 231 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 208 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
FYLKTGTCKF GASCKFHHPK NAGGSMTHVP LNIYGYPVRE GDNECSYYLK TGQCKFGITC 60 KFHHPQPAGT TVPPPPPASA PQFYPSVQSL MPDQYGGPSS SLRVARTLLP GSYMQGAYGP 120 MLLTPGVVPI PGWSPYSSLS DSLLLQAPVS PALSPGAQHA VGATSLYGVT QLSSTTPSLP 180 GVYPSLSSPT GVIQKEQAFP ERPGEPECQY YLKTGDCKFG TSCKFHHPRD RVPPRANCIL 240 SPIGLPLRPV CSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 855832 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT030391 | 0.0 | BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001078078.1 | 1e-165 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Refseq | NP_182306.2 | 1e-165 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q84W91 | 1e-166 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | D7MVW4 | 0.0 | D7MVW4_ARALL; Predicted protein (Fragment) | ||||
STRING | Al_scaffold_0039_1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5912 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-149 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 855832 |
Entrez Gene | 9299136 |