PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 855785 | ||||||||
Common Name | ARALYDRAFT_655147, ARALYDRAFT_903597 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 216aa MW: 24504.7 Da PI: 8.9804 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H 855785 50 YTCSFCRREFRSAQALGGHMNVH 72 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.17E-6 | 47 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-4 | 48 | 75 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.219 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-5 | 50 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MKRTHLASFS NTNKTQEEEE EDTNIGDNRV IMNHYKNYEA GLIPWPPKNY TCSFCRREFR 60 SAQALGGHMN VHRRDRAKLR QIPSWLFEPH HHIPIGNPNP NFSSSSSSLT TPAHLEPSLT 120 NQRSKTTTFP SARFDLLDST TSYGGLMVDR EKNKSNVCSR EIKKSAIDAC HSVRCEISRG 180 DLMNKKDDQV MGLELGMSLK NPKQVLDLEL RLGYL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-13 | 45 | 72 | 2 | 29 | superman protein |
2l1o_A | 5e-13 | 45 | 72 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 855785 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC005956 | 0.0 | AC005956.4 Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002862495.1 | 1e-162 | zinc finger protein 11 | ||||
Refseq | XP_002879984.1 | 1e-162 | zinc finger protein 11 | ||||
Swissprot | Q9SLB8 | 1e-144 | ZFP11_ARATH; Zinc finger protein 11 | ||||
TrEMBL | D7LI58 | 1e-161 | D7LI58_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0409_3 | 1e-162 | (Arabidopsis lyrata) | ||||
STRING | scaffold_403098.1 | 1e-162 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42410.1 | 1e-134 | zinc finger protein 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 855785 |
Entrez Gene | 9298572 |