PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 497511 | ||||||||
Common Name | ARALYDRAFT_497511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 314aa MW: 35053.9 Da PI: 4.6217 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.3e-18 | 74 | 125 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k 497511 74 RRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 125 467789*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129 | 1.9e-41 | 71 | 163 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl eqvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk+++++L++++++L ++ke 497511 71 EKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSLQRDNDSLLGQIKE 163 69*************************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.34E-19 | 63 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-18 | 70 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.07E-17 | 72 | 128 | No hit | No description |
Pfam | PF00046 | 6.3E-16 | 73 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-20 | 76 | 134 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.8E-6 | 98 | 107 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.8E-6 | 107 | 123 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-16 | 127 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MKRSRGSSDS LAGFLPIRHS TTDKQISPRP TTTGFLYSGA GDYSQMFDAL EDDGSLEDIG 60 GVGHASSTAA EKKRRLGVEQ VKALEKNFEI DNKLEPERKV KLAQELGLQP RQVAIWFQNR 120 RARWKTKQLE RDYGVLKSNF DALKRSRDSL QRDNDSLLGQ IKELKTKLNV EGVKGIEENG 180 VEKAMEANQA VMASNEVVEL NHRLPPPPTH IPTEDPTSEL AYEMFSIFPR TENFREDPAD 240 SSDDSSAVLN EEYSPTTVEA AGTVAATAVE MSTMGCFSQF VKMEEHEDLF SGEEACKLFA 300 DNEQWYCSDQ WNS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 127 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00587 | DAP | Transfer from AT5G65310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 497511 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF325054 | 0.0 | AF325054.2 Arabidopsis thaliana AT5g65310 (AT5g65310/MNA5_4) mRNA, complete cds. | |||
GenBank | AY074293 | 0.0 | AY074293.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds. | |||
GenBank | AY091340 | 0.0 | AY091340.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (At5g65310) mRNA, complete cds. | |||
GenBank | X67033 | 0.0 | X67033.1 A.thaliana mRNA Athb-5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882283.1 | 0.0 | homeobox-leucine zipper protein ATHB-5 | ||||
Refseq | XP_020882338.1 | 0.0 | homeobox-leucine zipper protein ATHB-5 | ||||
Swissprot | P46667 | 0.0 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | D7MXY0 | 0.0 | D7MXY0_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.666__2__AT5G65310.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12986 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.1 | 0.0 | homeobox protein 5 |
Link Out ? help Back to Top | |
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Phytozome | 497511 |
Entrez Gene | 9298421 |
Publications ? help Back to Top | |||
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