PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 497432 | ||||||||
Common Name | ARALYDRAFT_497432 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 291aa MW: 33596.6 Da PI: 10.6238 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.7 | 5.9e-20 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ffkvl + d +++++ lp +f+++++++ e s +++++ ++g sWev++ +k+++ ++ ++GW +Fv++n L +++f++F+++g+++f +v +f++ 497432 19 FFKVLQRVDFSSENLRALPYDFVRSFSNN-ELSGKMKIKAQWGSSWEVEI--CKNPRFyFMEKSGWVKFVRDNALGDNEFLTFTHKGTMRF--TVNIFKQ 113 99***********************9877.5777****************..******555569*********************999999..9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-19 | 13 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-20 | 15 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.65E-19 | 18 | 112 | No hit | No description |
SMART | SM01019 | 2.7E-22 | 19 | 114 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.733 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-19 | 19 | 113 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-16 | 193 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-13 | 194 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.192 | 197 | 290 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-11 | 200 | 290 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MARNSDYDMC KEERKRESFF KVLQRVDFSS ENLRALPYDF VRSFSNNELS GKMKIKAQWG 60 SSWEVEICKN PRFYFMEKSG WVKFVRDNAL GDNEFLTFTH KGTMRFTVNI FKQDGKEMLQ 120 PPQSMASMAS SRRRRTKTEQ GISYLATTIT AESNGGENYT RKLNFEKKKA AESQNSKRTE 180 KVFSVRRDSA GASSSSVAEF TIFIKKSYLI FMRIPKSVQS IHMPMQRTIF KIHQPNMKKS 240 WNVVYLVANR GASFSGGWKR LAQEYPVAVG DTCKFSFIKQ HELILFVSKP * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 497432 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT020353 | 0.0 | BT020353.1 Arabidopsis thaliana At2g35310 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020891251.1 | 0.0 | B3 domain-containing protein At2g35310 isoform X1 | ||||
Swissprot | Q5PNU4 | 1e-172 | Y2531_ARATH; B3 domain-containing protein At2g35310 | ||||
TrEMBL | D7MXL5 | 0.0 | D7MXL5_ARALL; Transcriptional factor B3 family protein | ||||
STRING | fgenesh2_kg.457__2__AT2G35310.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35310.1 | 1e-168 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 497432 |
Entrez Gene | 9298535 |
Publications ? help Back to Top | |||
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