PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 497317
Common NameARALYDRAFT_497317
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 572aa    MW: 61816.3 Da    PI: 4.8636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
497317genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.65e-1071925712374
    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
             +++++e+A+a+++g++e a+++Lar+s++ + ++++ ++l+ +++ AL++r++      +++l++ +t e   +e+l +++l++e+sP++k+++ +aN aIl+
  497317 192 RQTVMEIATAIAEGKTEIATEILARVSQTPNLERSSEEKLVDFMVTALRSRINP-----AESLASPAT-ELYGKEHLISTQLLNELSPCYKLGFTAANLAILN 288
             6889*************************************************9.....444433333.45699***************************** PP

    GRAS 105 avege....ervHiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
             a+ ++     ++H+iDfdi++G+Q+++Llq+L++R++g      +p ++iT+v ++ +g       +e+l+ +g+ L+++ ++lg++++fnv+++ rl dl+ 
  497317 289 AAGNNdagmMMLHVIDFDIGEGGQYVNLLQTLSTRRNGknqnqnSPVVKITAVTNNVYGflvdggGEERLKVVGDLLSQLGNRLGISVSFNVVASLRLGDLSR 391
             **9998877788*********************999444455559**********99889****99**************************8888******* PP

    GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
             e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y al+ds+e+++p+ +++r+kvE+  +gr++
  497317 392 ESLGCDPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLDSVESTVPSLNSDRVKVEEG-IGRKL 493
             *************************************************************************************************.***** PP

    GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
              n+vaceg +r+er+e ++kWr+r+++aGF+ +plsek+a+  +      +  g++v+e++g +++gW++r+L ++SaWr
  497317 494 INAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIADRLNNGNL--AHPGFTVKEDNGGVCFGWMGRTLAVASAWR 571
             ***************************************987766443..356**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.924165553IPR005202Transcription factor GRAS
PfamPF035141.7E-104192571IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MESGFSGGGG GSDFHGGGGR SIPGGPGTVI NVGNNNPQPT YRNQIPGIFL DQIGNRVSAG  60
NGFAGKRTLA DFQAAQQYQQ QQQQQQQQQQ PFYNQAALNA FLLRSVQHNR IHESENMLNS  120
LRELEKQLLD DDDESGGDDD VSVITNSNSD WIQNLVTPNP NPNPNPVLSF SPTSSSSSSP  180
STASTTTSVC SRQTVMEIAT AIAEGKTEIA TEILARVSQT PNLERSSEEK LVDFMVTALR  240
SRINPAESLA SPATELYGKE HLISTQLLNE LSPCYKLGFT AANLAILNAA GNNDAGMMML  300
HVIDFDIGEG GQYVNLLQTL STRRNGKNQN QNSPVVKITA VTNNVYGFLV DGGGEERLKV  360
VGDLLSQLGN RLGISVSFNV VASLRLGDLS RESLGCDPDE PLAVNLAFKL YRVPDESVCT  420
ENPRDELLRR VKGLKPRVVT LVEQEMNSNT APFLGRVSES CACYGALLDS VESTVPSLNS  480
DRVKVEEGIG RKLINAVACE GIDRIERCEV FGKWRMRMSM AGFELMPLSE KIADRLNNGN  540
LAHPGFTVKE DNGGVCFGWM GRTLAVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3119057111375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap497317
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0363050.0AF036305.1 Arabidopsis thaliana scarecrow-like 8 (SCL8) mRNA, partial cds.
GenBankAP0003780.0AP000378.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T4M5.
GenBankAY0996860.0AY099686.1 Arabidopsis thaliana SCARECROW transcriptional regulator-like (At5g52510) mRNA, complete cds.
GenBankAY1288680.0AY128868.1 Arabidopsis thaliana SCARECROW transcriptional regulator-like (At5g52510) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872349.10.0LOW QUALITY PROTEIN: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLD7MWU20.0D7MWU2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.205__1__AT5G52510.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8