PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 497265 | ||||||||
Common Name | ARALYDRAFT_497265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27085.4 Da PI: 5.4767 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.5e-13 | 64 | 110 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h ++E+rRRdriNs + Lr+l+P++ Kl+Ka+ L ++e +k+L 497265 64 RSHRQAEKRRRDRINSHLTALRKLVPNS-----DKLDKAALLASVIEQVKEL 110 68*************************8.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.24E-13 | 60 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.313 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-14 | 64 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 64 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.88E-11 | 64 | 113 | No hit | No description |
SMART | SM00353 | 3.1E-11 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.1E-5 | 152 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MENSYDSSKW SDSTTPYMVS WSLQSESPDS DWSRFNLGFS FSSSGYFPAD DCVGGIEKAE 60 SLSRSHRQAE KRRRDRINSH LTALRKLVPN SDKLDKAALL ASVIEQVKEL KQKATESPSF 120 EDLPTEADEV TVQLETISDF ESNTNTIIFK ASFCCEDQPE AISEIIRVLT KLNLETIQAE 180 IMCVGERMRI NFILKDSNCN ETTNIAASAK ALKQSLCAAL NRITSSSSTT SSVCRIRSKR 240 QR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 497265 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493583 | 0.0 | AB493583.1 Arabidopsis thaliana At2g40200 mRNA for hypothetical protein, partial cds, clone: RAAt2g40200. | |||
GenBank | AF488586 | 0.0 | AF488586.1 Arabidopsis thaliana clone bHLH051 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | BT029997 | 0.0 | BT029997.1 Arabidopsis thaliana At2g40200 mRNA, complete cds. | |||
GenBank | BT030051 | 0.0 | BT030051.1 Arabidopsis thaliana At2g40200 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002862876.2 | 1e-177 | transcription factor bHLH51, partial | ||||
Swissprot | Q9XEF0 | 1e-155 | BH051_ARATH; Transcription factor bHLH51 | ||||
TrEMBL | D7MWE4 | 1e-177 | D7MWE4_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.108__1__AT2G40200.1 | 1e-178 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6806 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-156 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 497265 |
Entrez Gene | 9298956 |
Publications ? help Back to Top | |||
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