PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 497236
Common NameARALYDRAFT_496151, ARALYDRAFT_497236
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 481aa    MW: 53022 Da    PI: 6.6597
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
497236genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-17154203155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  497236 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 203
             78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.97E-11154210No hitNo description
PfamPF008471.2E-8154203IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-15154211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-16155211IPR001471AP2/ERF domain
PROSITE profilePS5103217.359155211IPR001471AP2/ERF domain
SMARTSM003801.3E-30155217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLDLNLDVDS AESTQNERDS VTVEGVSLNQ MDESVTSNSS VVNAEASSCI DGEDELCSTR  60
TVKFQFEILK GGEEEEEEED DDERSAVMMT KEFFPVAKGM NFMDSSAQSS RSTVDISFQR  120
GKQGGDFGAD AARVMQPPSQ PVKKSRRGPR SKSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHAA ARAYDRAAVK FRGLEADINF IISDYEEDLK QMANLSKEEV VQVLRRQSSG  240
FSRNNSRYQG VSLQKIGGWG AQMEQFHGNM ASDKAAIQWN GREAASLIEP HASRMIPEAA  300
NVKLDLNLGI SLSLGDGPKQ KERALRLHHV PNITVCGRNI MMENHMAAAA CDTPFNFLKR  360
GSDHLNNRHS LPSAFFSPME RTPEKGHMLR SHQSFPARTW QGHDQSSGGT AVAATAPPLF  420
SNAASSGFSL SATRPPSSIA TPHPSQPFLN MNQPGLYVIH PSDYTSQHHH NLMNRPQPPP  480
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap497236
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0019160.0BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874049.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X2
RefseqXP_020888751.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLD7MT670.0D7MT67_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.71__6__AT5G60120.10.0(Arabidopsis lyrata)
STRINGfgenesh2_kg.8__1967__AT5G60120.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2