PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 497116 | ||||||||
Common Name | ARALYDRAFT_497116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 181aa MW: 20859.8 Da PI: 8.8022 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.2 | 2.5e-22 | 24 | 106 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY eY+k +GF vr+ + ++s +g+ r++ C+k+g+++++ ++ + +++r gCka++ vk+ek+gkw+vt++++eHnH+l 497116 24 EFYVEYSKILGFVVRMMQRRRSGIDGRSLARRLGCNKQGFSRTDPRS------SCSSSREGCKATILVKMEKSGKWVVTRFVKEHNHSL 106 6****************************************998877......9999******************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-20 | 24 | 107 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MTGDLKLHEP YVGMKFESEE EAKEFYVEYS KILGFVVRMM QRRRSGIDGR SLARRLGCNK 60 QGFSRTDPRS SCSSSREGCK ATILVKMEKS GKWVVTRFVK EHNHSLLFIG SSSNSFADKD 120 RKIKELAEEI ECQDRLCDAY RDRLVSFIDN FEHYTGELSL KVRDIVENIK KLECQIQTRA 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 497116 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT012077 | 0.0 | BT012077.1 Arabidopsis thaliana At4g12850 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002863287.2 | 1e-131 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | D7MVJ0 | 1e-130 | D7MVJ0_ARALL; Far-red impaired responsive family protein | ||||
STRING | fgenesh2_kg.9__81__AT4G12850.1 | 1e-130 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-107 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | 497116 |
Entrez Gene | 9299283 |