PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 497036 | ||||||||
Common Name | ARALYDRAFT_497036 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 30196 Da PI: 9.4577 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+ +G g+W+++++ g++R +k+c++rw +yl 497036 8 KGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W++Iar ++ gRt++++k++w+++ 497036 61 RGQITPHEENIILELHAKWGNR-WSSIARSLP-GRTDNEIKNYWRTH 105 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.975 | 1 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.69E-30 | 7 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-17 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-24 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.43E-12 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.535 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.73E-11 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MVEEVWRKGP WTAEEDRLLI EYVRVHGEGR WNSVSKLAGL KRNGKSCRLR WVNYLRPDLK 60 RGQITPHEEN IILELHAKWG NRWSSIARSL PGRTDNEIKN YWRTHFKKKA KPTTNNAEKI 120 KSRLLKRQQF KEQREIELQQ EQQLFQFDQL DMKKIISLLE DNNSSSSSDG GGDVFYSPYQ 180 ITHSSKPFGY NPNSLEEQLQ GRFTPVNIPD ANTMSEDNAI WDGFWNMDVV DGNGGNLGVV 240 AATAAYGPRK PYFHNLVIPF C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 8 | 110 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 497036 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133705 | 0.0 | AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002863237.2 | 0.0 | myb-related protein 305 isoform X2 | ||||
TrEMBL | D7MV59 | 0.0 | D7MV59_ARALL; MYB transcription factor | ||||
STRING | fgenesh2_kg.9__1__AT4G13480.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-145 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | 497036 |
Entrez Gene | 9299203 |