PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496979

Common Name

ARALYDRAFT_496979

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C3H

Protein Properties

Length: 453aa MW: 49911 Da PI: 10.0056

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496979	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	406	428	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f r C+ G++C + H+ 496979 406 KPCMYFNRAKGCRLGESCLYLHD 428 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.779	403	430	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-4	406	428	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-4	406	430	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.48E-5	406	431	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MMKKTKKSRV SWASDSMLCQ VKLFLTDDCP AKVASNLPPG FEATEYATRR ILSHIPRIKW 60 KRPPKVFVLN DALLVGRGGE STETRTENLR ISKVLEAFYP HRSVIPTRPS VSPAVEEAHY 120 DDRKTPNIRL TPVEDEREAA VESSHSFEAP AAVSGLGPEL SLLAAAALSA LTKEQGCQVD 180 ADLLVKLLSD PKIVESLIND MKGKPLETAN NSRSTDTNKP RLAPQHVTST AMDRNPPPIP 240 GNVVPHNVPV FVQSSATDPP LSKPTQPMSS TLSVNVNLQK PTLVVHSYPL SSAGIKLEDS 300 YTAAAPLKPS PVDDVVVSEQ KTQSLNMSST WNMNRVPESA RTETDAKIRN GNTNQDGEVS 360 AKPVKNLDYF KSLIREHGAV KPATNETNNY KGRVDDKKVV KVKIQKPCMY FNRAKGCRLG 420 ESCLYLHDRS KRLWTDVAPP HFPRAKRLKF RS*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MMKKTKKSRV SWASDSMLCQ VKLFLTDDCP AKVASNLPPG FEATEYATRR ILSHIPRIKW  60
KRPPKVFVLN DALLVGRGGE STETRTENLR ISKVLEAFYP HRSVIPTRPS VSPAVEEAHY  120
DDRKTPNIRL TPVEDEREAA VESSHSFEAP AAVSGLGPEL SLLAAAALSA LTKEQGCQVD  180
ADLLVKLLSD PKIVESLIND MKGKPLETAN NSRSTDTNKP RLAPQHVTST AMDRNPPPIP  240
GNVVPHNVPV FVQSSATDPP LSKPTQPMSS TLSVNVNLQK PTLVVHSYPL SSAGIKLEDS  300
YTAAAPLKPS PVDDVVVSEQ KTQSLNMSST WNMNRVPESA RTETDAKIRN GNTNQDGEVS  360
AKPVKNLDYF KSLIREHGAV KPATNETNNY KGRVDDKKVV KVKIQKPCMY FNRAKGCRLG  420
ESCLYLHDRS KRLWTDVAPP HFPRAKRLKF RS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496979

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117637	0.0	AK117637.1 Arabidopsis thaliana At5g66270 mRNA for unknown protein, complete cds, clone: RAFL17-29-H06.
GenBank	BT005171	0.0	BT005171.1 Arabidopsis thaliana clone U50458 unknown protein (At5g66270) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887391.1	0.0	zinc finger CCCH domain-containing protein 68
Swissprot	Q9FH61	0.0	C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBL	D7MMZ4	0.0	D7MMZ4_ARALL; Zinc finger (CCCH-type) family protein
STRING	fgenesh2_kg.8__2795__AT5G66270.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12

Link Out ? help Back to Top
Phytozome	496979
Entrez Gene	9302834