PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496973
Common NameARALYDRAFT_496973
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 340aa    MW: 37183.2 Da    PI: 6.1789
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496973genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18251285135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  496973 251 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRL 285
             *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-1081339IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.71E-14244307No hitNo description
SMARTSM004016.3E-16245299IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.793245281IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-15249283IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.58E-14251298No hitNo description
PfamPF003201.4E-16251285IPR000679Zinc finger, GATA-type
PROSITE patternPS003440251276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEQTALKSSI RKEMAFKTTP PVYEEFLAVT TAPNGFSADD FSVDDLLDLS NDDVFADEDT  60
DPKAQQDMVR VSSEEPNDDG DALRRSSDLS GCDDFGSLPT SELSVPADDL ANLEWLSHFV  120
DDSFTEYSGP NLTGTPTEKP SWLTGDRKHP VTPATEESCF KSPVPAKARS KRNRNGVKVW  180
SLGSSSSSGP SSSGSTSSSS SRPSSPWFSG AEMLEPVVTS ERPPFPKKHK KRSAESVFCG  240
QLQQLQPQRR CSHCGVQKTP QWRAGPMGAK TLCNACGVRY KSGRLLPEYR PACSPTFSSE  300
LHSNHHRKVM EMRRKKEPTS DNEPGLNQMV QSPQAVPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap496973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1364500.0AY136450.1 Arabidopsis thaliana GATA-binding transcription factor-like protein (At5g66320) mRNA, complete cds.
GenBankBT0103670.0BT010367.1 Arabidopsis thaliana At5g66320 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890008.10.0GATA transcription factor 5
SwissprotQ9FH570.0GATA5_ARATH; GATA transcription factor 5
TrEMBLD7MMY80.0D7MMY8_ARALL; GATA transcription factor
STRINGfgenesh2_kg.8__2789__AT5G66320.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.20.0GATA transcription factor 5