PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 496850 | ||||||||
Common Name | ARALYDRAFT_496850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 247aa MW: 26622.1 Da PI: 7.6094 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksFs+ L H +H 496850 98 YKCSVCGKSFSSYQALGGHKTSH 120 9***********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.23E-10 | 97 | 120 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 98 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.281 | 98 | 125 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 98 | 120 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.2E-14 | 98 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.23E-10 | 160 | 187 | No hit | No description |
SMART | SM00355 | 0.82 | 165 | 187 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.9E-11 | 165 | 189 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 165 | 187 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 167 | 187 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MALETLNSPT ATTTDRPLLR YREEMEPENL EQWAKRKRTK RQRFDHGHQN QETNKNHLPS 60 EEEYLALCLL MLARGSAVQS PPLPPLPSRP SPSDHRDYKC SVCGKSFSSY QALGGHKTSH 120 RKPTNNSITS GNQELSNNSH SNSGSVVINV TVNTSNGVSQ NGKIHTCSIC FKSFSSGQAL 180 GGHKRCHYDG GSNGNGNGSS SNSVEVVAGS DVSDVDNERS SEESAIGGHR GFDLNLPADQ 240 VSVTIS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00118 | ampDAP | Transfer from AT5G67450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 496850 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007645 | 0.0 | AB007645.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14. | |||
GenBank | AY123328 | 0.0 | AY123328.1 Arabidopsis thaliana zinc finger protein OZAKGYO (OZAKGYO) gene, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020869381.1 | 0.0 | zinc finger protein AZF1 | ||||
Swissprot | Q9SSW1 | 1e-146 | AZF1_ARATH; Zinc finger protein AZF1 | ||||
TrEMBL | D7MUQ5 | 0.0 | D7MUQ5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.8__2666__AT5G67450.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3121 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 1e-130 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | 496850 |
Entrez Gene | 9301076 |
Publications ? help Back to Top | |||
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