PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 496768 | ||||||||
Common Name | ARALYDRAFT_496768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 363aa MW: 41705.5 Da PI: 8.9743 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.7 | 4e-25 | 8 | 57 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s++++++++R+++i+KKA ELS+LC++ev+vi++++ g+l+++++ 496768 8 SSSSSSRNSTSLTNRLKTIFKKALELSILCAIEVCVIYYGPGGELKTWPK 57 799*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.498 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.0E-4 | 2 | 58 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-13 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.27E-15 | 12 | 91 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MKQASFSSSS SSSRNSTSLT NRLKTIFKKA LELSILCAIE VCVIYYGPGG ELKTWPKERE 60 TVKDMALRYK EARKRKKSLN LHEFLDKEKD KDKDKDKGKT NLKKKQKKNV KYHDWYPNFD 120 HYSPHQLSQL NQSLEQTLST LQERLRFVEA QKQQNINLVD QNLTPSYLNQ NQHLNPSKFS 180 LYMYNHGDAT LSQLPLSASH SDQLTNYQNH LMQQQELYGF GQNLCLGNIT NTNFQRPYVS 240 NTQDYSPLLS AQASVVNNYG LNNHSMQKQD LHGIDRNVCM LSEIINNNNN NDLQHPNLSN 300 KIPHEFSSDF QQNPYFNTVG NTSFSQDMFS SYDASSLHQT SSLPPLHNIP NSYCFSDNSR 360 LL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 76 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 496768 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864952.1 | 0.0 | agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 4e-73 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | D7MTX2 | 0.0 | D7MTX2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.8__2584__AT5G65330.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65330.1 | 1e-178 | AGAMOUS-like 78 |
Link Out ? help Back to Top | |
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Phytozome | 496768 |
Entrez Gene | 9302738 |
Publications ? help Back to Top | |||
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