PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496765

Common Name

ARALYDRAFT_496765

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HD-ZIP

Protein Properties

Length: 314aa MW: 35037.9 Da PI: 4.6217

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496765	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.3e-18	74	125	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k 496765 74 RRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 125 467789*********************************************9 PP
2	HD-ZIP_I/II	129	1.9e-41	71	163	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl eqvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk+++++L++++++L ++ke 496765 71 EKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSLQRDNDSLLGQIKE 163 69*************************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.34E-19	63	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	67	127	IPR001356	Homeobox domain
SMART	SM00389	5.3E-18	70	131	IPR001356	Homeobox domain
CDD	cd00086	1.05E-16	72	128	No hit	No description
Pfam	PF00046	6.3E-16	73	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.5E-20	76	134	IPR009057	Homeodomain-like
PRINTS	PR00031	7.8E-6	98	107	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.8E-6	107	123	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.0E-16	127	168	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MKRSRGSSDS LAGFLPIRHS TTDKQISPRP TTTGFLYSGA GDYSQMFDAL EDDGSLEDIG 60 GVGHASSTAA EKKRRLGVEQ VKALEKNFEI DNKLEPERKV KLAQELGLQP RQVAIWFQNR 120 RARWKTKQLE RDYGVLKSNF DALKRSRDSL QRDNDSLLGQ IKELKTKLNV EGVKGIEENG 180 VEKAMEANQA VMASNEVVEL NHRPPPPPTH IPTEDPTSEL AYEMFSIFPR TENFREDPAD 240 SSDDSSAVLN EEYSPTTVEA AGTVAATAVE MSTMGCFSQF VKMEEHEDLF SGEEACKLFA 300 DNEQWYCSDQ WNS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269\|PubMed:12678559}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496765

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:12678559, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF325054	0.0	AF325054.2 Arabidopsis thaliana AT5g65310 (AT5g65310/MNA5_4) mRNA, complete cds.
GenBank	AY074293	0.0	AY074293.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds.
GenBank	AY091340	0.0	AY091340.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (At5g65310) mRNA, complete cds.
GenBank	X67033	0.0	X67033.1 A.thaliana mRNA Athb-5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871153.1	0.0	homeobox-leucine zipper protein ATHB-5
Refseq	XP_020871154.1	0.0	homeobox-leucine zipper protein ATHB-5
Swissprot	P46667	0.0	ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBL	D7MTX0	0.0	D7MTX0_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.8__2581__AT5G65310.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12986	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.1	0.0	homeobox protein 5

Link Out ? help Back to Top
Phytozome	496765
Entrez Gene	9302736

Publications ? help Back to Top
Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Stamm P, et al. The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination. Plant Physiol., 2017. 173(1): p. 907-917 [PMID:27872245]