PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496718

Common Name

ARALYDRAFT_496718

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 342aa MW: 37977.8 Da PI: 9.1695

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496718	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.3e-05	223	261	8	50
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 +Er RR+ri + + L +llP+ + + s +L v++ 496718 223 NERERRQRIDDNIKALGKLLPHKVEG----DSPGLTLNAIVDH 261 7*********************8433....3444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.8.10	3.3E-4	4	36	No hit	No description
SuperFamily	SSF47459	1.27E-6	222	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-6	223	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MGFRSVYQSL TELFPQIDPK ILRGVAIEHQ HDADEAASLV ISEIFPFSSP NSTQPRNKNK 60 TKISDNPPNL KVEGDDGSLS LSQWLQPSKL PHSYLALLNE ESTPDVKPPP DYVVEKVVLP 120 SRGSAAGVGG GIRTMYSSDN IGGSSLVKPS IRVQSRTNYE LSGSSSKAHV GRRSSRKSAQ 180 PWSPDYSQKL RSWKKRNNNR DFSQLFGNDR DVPSKKSNRC YTNERERRQR IDDNIKALGK 240 LLPHKVEGDS PGLTLNAIVD HVKLLQLQMK ELSRSRLGEP VSHPMTFIEG YGHYIHHEQT 300 VTKSLEEVME DMLTNDLDAA ANLLESKGLY LMPLSSVQGS C*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MGFRSVYQSL TELFPQIDPK ILRGVAIEHQ HDADEAASLV ISEIFPFSSP NSTQPRNKNK  60
TKISDNPPNL KVEGDDGSLS LSQWLQPSKL PHSYLALLNE ESTPDVKPPP DYVVEKVVLP  120
SRGSAAGVGG GIRTMYSSDN IGGSSLVKPS IRVQSRTNYE LSGSSSKAHV GRRSSRKSAQ  180
PWSPDYSQKL RSWKKRNNNR DFSQLFGNDR DVPSKKSNRC YTNERERRQR IDDNIKALGK  240
LLPHKVEGDS PGLTLNAIVD HVKLLQLQMK ELSRSRLGEP VSHPMTFIEG YGHYIHHEQT  300
VTKSLEEVME DMLTNDLDAA ANLLESKGLY LMPLSSVQGS C*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496718

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029204	0.0	BT029204.1 Arabidopsis thaliana At5g64980 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884816.1	0.0	uncharacterized protein LOC9302716 isoform X1
Refseq	XP_020884822.1	0.0	uncharacterized protein LOC9302716 isoform X1
TrEMBL	D7MSL9	0.0	D7MSL9_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.8__2534__AT5G64980.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-11	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	496718
Entrez Gene	9302716