PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496511
Common NameARALYDRAFT_496511
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 271aa    MW: 31202 Da    PI: 9.1925
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496511genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011104127123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              +kC++C+ksF++   L +H  t H
   496511 104 WKCGYCKKSFNDEKFLDKHFTTrH 127
              58*****************88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642104127IPR007087Zinc finger, C2H2
PROSITE patternPS000280106127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRLCESLPV ILLLFALLLH QSLSQGFEES ESTRLVNEEV GGNSPEIHCS RERSRAAWQI  60
IQDYLTPFVE RERYQIPKNC RLHPDNDLYR DQEQHKIHVD VFEWKCGYCK KSFNDEKFLD  120
KHFTTRHYNL LNTTDTKCLA DLCGALHCDF VLNSKKPKTK CNPAAVAKNR HLCESVANSC  180
FPVSQGPSAS RLHEHFLRQF CDAHTCTGKD KPFPRGGKKK SGVFYLAISI LTLMLLPLFY  240
LLVFLYQREK RSGTQELRRI RKTGRKPKPS *
Cis-element ? help Back to Top
SourceLink
PlantRegMap496511
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0639590.0AY063959.1 Arabidopsis thaliana unknown protein (At5g63280) mRNA, complete cds.
GenBankAY1338530.0AY133853.1 Arabidopsis thaliana clone U11672 unknown protein (At5g63280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871758.10.0uncharacterized protein LOC9302618
RefseqXP_020871759.10.0uncharacterized protein LOC9302618
TrEMBLD7MNZ80.0D7MNZ8_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.8__2327__AT5G63280.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-163C2H2-like zinc finger protein